Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088887 | Potato | endoplasmic reticulum, extracellular | 51.61 | 53.78 |
| PGSC0003DMT400094311 | Potato | extracellular | 50.0 | 53.45 |
| PGSC0003DMT400094421 | Potato | endoplasmic reticulum, mitochondrion | 53.23 | 51.56 |
| PGSC0003DMT400089480 | Potato | nucleus | 56.45 | 51.47 |
| PGSC0003DMT400091186 | Potato | mitochondrion | 55.65 | 50.74 |
| PGSC0003DMT400094846 | Potato | mitochondrion, nucleus | 54.84 | 50.0 |
| PGSC0003DMT400095704 | Potato | mitochondrion | 54.03 | 48.91 |
| PGSC0003DMT400087364 | Potato | mitochondrion | 50.0 | 45.59 |
| KRH27119 | Soybean | nucleus | 45.97 | 42.22 |
| PGSC0003DMT400090970 | Potato | nucleus | 42.74 | 39.55 |
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 42.74 | 39.26 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 42.74 | 39.26 |
| HORVU2Hr1G043860.1 | Barley | nucleus | 42.74 | 39.26 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 30.65 | 35.85 |
| CDY23443 | Canola | mitochondrion | 33.87 | 35.0 |
| Bra029498.1-P | Field mustard | mitochondrion | 33.87 | 35.0 |
| PGSC0003DMT400002745 | Potato | nucleus | 33.87 | 31.11 |
| PGSC0003DMT400049686 | Potato | nucleus | 34.68 | 30.94 |
| PGSC0003DMT400051893 | Potato | extracellular | 33.87 | 30.66 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 16.94 | 29.17 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 33.06 | 27.15 |
| CDY11491 | Canola | mitochondrion | 16.13 | 23.26 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 15.32 | 14.84 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | UniProt:M1DC05 | PFAM:PF00125 | PFAM:PF16211 | EnsemblPlantsGene:PGSC0003DMG400036124 | PGSC:PGSC0003DMG400036124 |
| EnsemblPlants:PGSC0003DMT400086553 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF141 | SMART:SM00414 | SUPFAM:SSF47113 |
| SignalP:SignalP-noTM | UniParc:UPI000296BB48 | : | : | : | : |
Description
Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400036124]
Coordinates
chr5:-:12477667..12482722
Molecular Weight (calculated)
13696.8 Da
IEP (calculated)
4.444
GRAVY (calculated)
0.232
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MIACLLLYFD PLSSLMLFIV GAGGCELELA GVPAPVFFDE VLEYLATEVL ELDGIAARND KKTRIIPRHI QLAIRFDDKL PQFLRDVMIP NGGVIPNIHN
101: IFLPNKKNCS SKAAIVGGQE EEED
101: IFLPNKKNCS SKAAIVGGQE EEED
001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
Arabidopsis Description
HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.