Factsheet for PGSC0003DMT400089480

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	93.38	93.38
PGSC0003DMT400091186	Potato	mitochondrion	91.91	91.91
Solyc05g014800.1.1	Tomato	nucleus	85.29	85.93
PGSC0003DMT400095704	Potato	mitochondrion	83.82	83.21
Solyc05g014890.1.1	Tomato	mitochondrion	77.94	78.52
PGSC0003DMT400087364	Potato	mitochondrion	77.94	77.94
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	73.53	76.34
HORVU2Hr1G043840.1	Barley	mitochondrion	38.24	72.22
Solyc05g014870.1.1	Tomato	nucleus	54.41	70.48
PGSC0003DMT400090970	Potato	nucleus	66.18	67.16
KRH27119	Soybean	nucleus	63.97	64.44
TraesCS2B01G239700.1	Wheat	mitochondrion	62.5	62.96
TraesCS2A01G214700.1	Wheat	mitochondrion	62.5	62.96
HORVU2Hr1G043860.1	Barley	nucleus	62.5	62.96
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	58.82	62.5
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	52.21	59.66
PGSC0003DMT400094311	Potato	extracellular	49.26	57.76
Bra029498.1-P	Field mustard	mitochondrion	50.74	57.5
CDY23443	Canola	mitochondrion	50.0	56.67
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	51.47	56.45
CDY11491	Canola	mitochondrion	35.29	55.81
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	38.24	49.06
PGSC0003DMT400051893	Potato	extracellular	47.79	47.45
PGSC0003DMT400002745	Potato	nucleus	47.06	47.41
PGSC0003DMT400049686	Potato	nucleus	47.79	46.76
HORVU6Hr1G003750.1	Barley	nucleus	30.15	32.03

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102582468	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:M1DI90	PFAM:PF00125	PFAM:PF16211
EnsemblPlantsGene:PGSC0003DMG400039051	PGSC:PGSC0003DMG400039051	EnsemblPlants:PGSC0003DMT400089480	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF141	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI0002948106	RefSeq:XP_006341737.1	SEG:seg

Description

Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400039051]

Coordinates

chr5:-:12602368..12602875

Molecular Weight (calculated)

14876.1 Da

IEP (calculated)

11.065

GRAVY (calculated)

-0.235

Length

136 amino acids

Sequence
(BLAST)

001: MAGKGKNLGS NAKRRSRSSK AGLQFPVARI ARFLKVGKYA KRVGAGAPVF LAAVLEYLAV EVLELAGIAA RNDKKTRIIP RHIQLAIRFD KELNQFLRDV
101: TIPNGGVIPR IHNIFLPNNK SNTSKAIADA ADEEED

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.