Factsheet for Solyc05g014860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014800.1.1	Tomato	nucleus	81.68	79.26
PGSC0003DMT400089480	Potato	nucleus	76.34	73.53
Solyc05g014890.1.1	Tomato	mitochondrion	74.05	71.85
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	72.52	69.85
Solyc05g014880.1.1	Tomato	nucleus	46.56	69.32
PGSC0003DMT400091186	Potato	mitochondrion	70.23	67.65
PGSC0003DMT400095704	Potato	mitochondrion	69.47	66.42
Solyc05g014870.1.1	Tomato	nucleus	51.91	64.76
HORVU2Hr1G043840.1	Barley	mitochondrion	31.3	56.94
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	72.52	54.29
KRH27119	Soybean	nucleus	54.2	52.59
Bra029498.1-P	Field mustard	mitochondrion	46.56	50.83
TraesCS2B01G239700.1	Wheat	mitochondrion	51.91	50.37
TraesCS2A01G214700.1	Wheat	mitochondrion	51.91	50.37
HORVU2Hr1G043860.1	Barley	nucleus	51.91	50.37
CDY23443	Canola	mitochondrion	45.8	50.0
CDY11491	Canola	mitochondrion	29.77	45.35
Solyc05g014940.1.1	Tomato	nucleus	47.33	43.36
Solyc12g006830.1.1	Tomato	nucleus	41.22	40.0
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	32.06	39.62
Solyc05g014810.1.1	Tomato	mitochondrion	42.75	37.09
Solyc06g084430.2.1	Tomato	plasma membrane	25.95	35.05
Solyc05g014830.1.1	Tomato	nucleus	67.18	30.14
Solyc06g084090.2.1	Tomato	nucleus	41.98	27.09
HORVU6Hr1G003750.1	Barley	nucleus	24.43	25.0

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0040029
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072
UniProt:K4BYK4	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF141
SMART:SM00414	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc05g014860.1	EnsemblPlants:Solyc05g014860.1.1	TMHMM:TMhelix	UniParc:UPI00027666C8
SEG:seg	:	:	:	:	:

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4BYK4]

Coordinates

chr5:-:9061186..9061699

Molecular Weight (calculated)

14675.9 Da

IEP (calculated)

11.162

GRAVY (calculated)

-0.372

Length

131 amino acids

Sequence
(BLAST)

001: MAGEGKNLGS NAKRRSRSSK AGVKFPVDRI ARFLKVRKYA KRVAAGAPLF LAAVLEYIAI EVNFSTRNDK KTRITPRHIQ LAIRFDKELY QFLKDVTIPN
101: GGVIQKIHKI LLPNNNSNTS KVVVAAQEEE N

Best Arabidopsis Sequence Match ( AT4G27230.1 )
(BLAST)

001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D

Arabidopsis Description

HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.