CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G239700.1	Wheat	mitochondrion	85.93	85.93
TraesCS2A01G214700.1	Wheat	mitochondrion	85.93	85.93
HORVU2Hr1G043860.1	Barley	nucleus	85.19	85.19
HORVU2Hr1G043840.1	Barley	mitochondrion	43.7	81.94
Bra029498.1-P	Field mustard	mitochondrion	68.89	77.5
CDY23443	Canola	mitochondrion	68.15	76.67
Solyc05g014880.1.1	Tomato	nucleus	43.7	67.05
CDY11491	Canola	mitochondrion	42.22	66.28
PGSC0003DMT400089480	Potato	nucleus	64.44	63.97
Solyc05g014800.1.1	Tomato	nucleus	60.0	60.0
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	60.0	59.56
PGSC0003DMT400091186	Potato	mitochondrion	60.0	59.56
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	45.93	58.49
Solyc05g014890.1.1	Tomato	mitochondrion	57.04	57.04
PGSC0003DMT400095704	Potato	mitochondrion	57.04	56.2
KRH16015	Soybean	nucleus	52.59	55.47
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	52.59	54.2
KRH05097	Soybean	nucleus	52.59	52.99
KRH63015	Soybean	nucleus	52.59	52.99
PGSC0003DMT400087364	Potato	mitochondrion	53.33	52.94
KRH32088	Soybean	nucleus	53.33	52.94
KRH71352	Soybean	mitochondrion	53.33	52.94
KRH54863	Soybean	nucleus	52.59	52.59
Solyc05g014870.1.1	Tomato	nucleus	40.74	52.38
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	52.59	52.21
KRH52500	Soybean	nucleus	52.59	52.21
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	52.59	52.21
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	47.41	50.0
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	42.96	48.74
PGSC0003DMT400090970	Potato	nucleus	47.41	47.76
PGSC0003DMT400094311	Potato	extracellular	40.0	46.55
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	42.22	45.97
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	53.33	41.14
Solyc05g014940.1.1	Tomato	nucleus	42.22	39.86
Solyc05g014810.1.1	Tomato	mitochondrion	42.22	37.75
HORVU6Hr1G003750.1	Barley	nucleus	33.33	35.16
Solyc05g014830.1.1	Tomato	nucleus	51.85	23.97

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100816280	MapMan:12.1.2	EMBL:ACUP02007773	EnsemblPlantsGene:GLYMA_12G215500	GO:GO:0000786
GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C
InterPro:Histone_H2A_CS	UniProt:I1LUS3	InterPro:IPR009072	EnsemblPlants:KRH27119	ProteinID:KRH27119	ProteinID:KRH27119.1
PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF195
SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI0001BA86BE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:37463881..37464934

Molecular Weight (calculated)

14023.0 Da

IEP (calculated)

10.719

GRAVY (calculated)

-0.158

Length

135 amino acids

Sequence
(BLAST)

001: MAGRGKTLGS SAAKKATSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGGSSKAAA ADDDS

Best Arabidopsis Sequence Match ( AT5G54640.1 )
(BLAST)

001: MAGRGKTLGS GGAKKATSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGASKPQED

Arabidopsis Description

RAT5Histone H2A.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LD28]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.