CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16015	Soybean	nucleus	93.28	97.66
KRH63015	Soybean	nucleus	94.03	94.03
KRH54863	Soybean	nucleus	94.03	93.33
KRH52500	Soybean	nucleus	93.28	91.91
GSMUA_Achr10P...	Banana	nucleus	91.04	89.71
KRH32088	Soybean	nucleus	84.33	83.09
KRH71352	Soybean	mitochondrion	84.33	83.09
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	83.58	82.35
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	83.58	82.35
KRH27119	Soybean	nucleus	52.99	52.59

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EMBL:ACUP02010675	EnsemblPlantsGene:GLYMA_17G207100	GO:GO:0000786	GO:GO:0000790
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS
UniProt:I1MWP3	InterPro:IPR009072	EnsemblPlants:KRH05097	ProteinID:KRH05097	ProteinID:KRH05097.1	PFAM:PF00125
PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	SMART:SM00414
SUPFAM:SSF47113	UniParc:UPI00023D553C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:33940645..33943001

Molecular Weight (calculated)

14299.5 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.328

Length

134 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI TAKNPSSSKD KDKKKPISRS SRAGLQFPVG RIHRLLKSRV TAHGRVGATA AVYSAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SSKE

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.