Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH16015 | Soybean | nucleus | 86.76 | 92.19 |
| KRH63015 | Soybean | nucleus | 89.71 | 91.04 |
| KRH05097 | Soybean | nucleus | 89.71 | 91.04 |
| KRH54863 | Soybean | nucleus | 89.71 | 90.37 |
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 88.24 | 89.55 |
| AT1G52740.1 | Thale cress | nucleus | 86.03 | 87.31 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 86.03 | 87.31 |
| CDY21851 | Canola | nucleus | 85.29 | 86.57 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 85.29 | 86.57 |
| Bra018984.1-P | Field mustard | nucleus | 85.29 | 85.93 |
| CDY62197 | Canola | nucleus | 85.29 | 85.93 |
| CDY61820 | Canola | nucleus | 85.29 | 85.93 |
| CDY47568 | Canola | nucleus | 85.29 | 85.93 |
| CDY40131 | Canola | nucleus | 85.29 | 85.93 |
| Bra030365.1-P | Field mustard | nucleus | 85.29 | 85.93 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 84.56 | 85.82 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 84.56 | 85.82 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 83.82 | 85.07 |
| CDY62164 | Canola | nucleus | 77.94 | 84.8 |
| PGSC0003DMT400002745 | Potato | nucleus | 83.82 | 84.44 |
| Solyc12g006830.1.1 | Tomato | nucleus | 83.82 | 84.44 |
| CDY21852 | Canola | nucleus | 77.21 | 50.97 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 84.56 | 50.0 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 36.76 | 47.17 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009266 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0042742 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr10G20860_001 |
| EnsemblPlants:GSMUA_Achr10P20860_001 | EnsemblPlants:GSMUA_Achr10T20860_001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:Histone_H2A_CS | InterPro:IPR009072 | UniProt:M0RK11 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 |
| ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0002969FEF |
Description
Probable histone H2A variant 2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G20860_001]
Coordinates
chr10:-:26734653..26737934
Molecular Weight (calculated)
14546.8 Da
IEP (calculated)
11.193
GRAVY (calculated)
-0.265
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGAKGLI TARTSVPNSN KDKDKKKAIS RSHRAGLQFP VGRVHRLLKS RVAAHGRVGA TAAVYLAAIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKSSKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKSSKD
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.