CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21851	Canola	nucleus	58.25	89.55
CDY62197	Canola	nucleus	54.85	83.7
CDY47568	Canola	nucleus	54.85	83.7
CDY61820	Canola	nucleus	54.37	82.96
CDY40131	Canola	nucleus	54.37	82.96
CDY62164	Canola	nucleus	49.51	81.6
VIT_04s0008g04700.t01	Wine grape	nucleus	52.91	81.34
KRH52500	Soybean	nucleus	52.43	79.41
Solyc12g006830.1.1	Tomato	nucleus	51.46	78.52
PGSC0003DMT400002745	Potato	nucleus	51.46	78.52
GSMUA_Achr10P...	Banana	nucleus	50.97	77.21
CDX78246	Canola	cytosol	50.0	75.74
CDY14429	Canola	plastid	48.54	74.63
CDY07697	Canola	mitochondrion	48.54	74.63
CDY57201	Canola	nucleus	44.17	74.59
CDY07535	Canola	nucleus	49.03	73.19
CDX67603	Canola	nucleus	49.03	73.19
CDX99552	Canola	plastid	38.84	63.49
CDY13216	Canola	mitochondrion	48.06	52.94
CDX73471	Canola	plastid	50.0	49.52
CDY22659	Canola	nucleus, plastid	30.1	43.06
CDY11491	Canola	mitochondrion	17.48	41.86
CDY23443	Canola	mitochondrion	23.79	40.83
CDY51246	Canola	plastid	23.3	21.82

Protein Annotations

Gene3D:1.10.20.10	Gene3D:1.10.579.10	MapMan:12.1.2	GO:A0A078GA05	UniProt:A0A078GA05	EnsemblPlants:CDY21852
ProteinID:CDY21852	ProteinID:CDY21852.1	InterPro:Crypto/Photolyase_FAD-like_sf	InterPro:Cryptochr/Photolyase_FAD-bd	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00018155001	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_CS	InterPro:IPR009072	PFAM:PF00125	PFAM:PF03441
PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF55	SMART:SM00414	SUPFAM:SSF47113
SUPFAM:SSF48173	UniParc:UPI0004EDD575	SEG:seg	:	:	:

Description

BnaC01g35960DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078GA05]

Coordinates

chrLK032125:-:309810..311508

Molecular Weight (calculated)

22675.5 Da

IEP (calculated)

10.434

GRAVY (calculated)

-0.714

Length

206 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI MGKSSGNDKD KDKKKPTTRS SRAGLQFPVG RVHRLLKGRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGDMP KQYIYEPWTA PLSVQTKAKC IVGKDYPKPM VMHDAASKEC KRKMGEAYAL NKKMNGNIGD DDLKDLRRKL ETDEESNIRN
201: QRPKLN

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.