Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | CDX75016 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY33188 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY08401 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | CDY52874 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014808.1-P | Field mustard | mitochondrion | 72.73 | 100.0 |
| CDY57201 | Canola | nucleus | 65.24 | 100.0 |
| AT3G54560.1 | Thale cress | cytosol | 71.12 | 97.79 |
| CDX67603 | Canola | nucleus | 71.12 | 96.38 |
| CDY07535 | Canola | nucleus | 71.12 | 96.38 |
| CDX78246 | Canola | cytosol | 67.91 | 93.38 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 64.17 | 90.23 |
| CDY07697 | Canola | mitochondrion | 64.17 | 89.55 |
| CDY14429 | Canola | plastid | 63.64 | 88.81 |
| PGSC0003DMT400051893 | Potato | extracellular | 64.71 | 88.32 |
| KRH32088 | Soybean | nucleus | 64.17 | 88.24 |
| KRH71352 | Soybean | mitochondrion | 64.17 | 88.24 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 63.1 | 88.06 |
| Os10t0418000-01 | Rice | nucleus | 65.24 | 87.77 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 63.64 | 87.5 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 63.64 | 87.5 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 62.57 | 87.31 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 64.71 | 87.05 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 64.71 | 87.05 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 64.71 | 87.05 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 62.03 | 86.57 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 62.03 | 86.57 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 62.03 | 86.57 |
| Zm00001d027760_P001 | Maize | plastid | 63.64 | 86.23 |
| Os03t0162200-01 | Rice | nucleus | 63.64 | 86.23 |
| EES07107 | Sorghum | mitochondrion | 63.64 | 86.23 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 62.57 | 85.4 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 62.57 | 85.4 |
| Os03t0743400-01 | Rice | nucleus | 62.03 | 84.67 |
| PGSC0003DMT400049686 | Potato | nucleus | 62.57 | 84.17 |
| KXG28801 | Sorghum | nucleus | 59.36 | 83.46 |
| CDY62164 | Canola | nucleus | 55.08 | 82.4 |
| CDY21851 | Canola | nucleus | 58.82 | 82.09 |
| CDY62197 | Canola | nucleus | 58.82 | 81.48 |
| CDY61820 | Canola | nucleus | 58.82 | 81.48 |
| CDY47568 | Canola | nucleus | 58.82 | 81.48 |
| CDY40131 | Canola | nucleus | 58.82 | 81.48 |
| KXG40126 | Sorghum | nucleus | 56.15 | 78.95 |
| Zm00001d007567_P001 | Maize | nucleus | 52.41 | 74.24 |
| CDX99552 | Canola | plastid | 45.99 | 68.25 |
| CDX73471 | Canola | plastid | 70.05 | 62.98 |
| Solyc06g084090.2.1 | Tomato | nucleus | 66.31 | 61.08 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 35.83 | 55.83 |
| Zm00001d007553_P001 | Maize | nucleus | 53.48 | 52.63 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 64.71 | 52.61 |
| CDY21852 | Canola | nucleus | 52.94 | 48.06 |
| CDY22659 | Canola | nucleus, plastid | 34.76 | 45.14 |
| CDY23443 | Canola | mitochondrion | 27.27 | 42.5 |
| CDY11491 | Canola | mitochondrion | 18.18 | 39.53 |
| CDY51246 | Canola | plastid | 25.67 | 21.82 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078FJ61 | UniProt:A0A078FJ61 | EnsemblPlants:CDY13216 | ProteinID:CDY13216 |
| ProteinID:CDY13216.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00071113001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 |
| SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0004EEBEBA | SEG:seg | : | : |
Description
BnaC04g26190DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078FJ61]
Coordinates
chrLK032032:-:533535..535572
Molecular Weight (calculated)
20287.8 Da
IEP (calculated)
11.201
GRAVY (calculated)
-0.365
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPPRFLKYF KTPTKIPTLK PPTPFNATRF RFVSSSSQDL RSEGTPIASE NMAGKGGKGL VAAKTMAANK DKDKGKMKPI SRSARAGIQF PVGRIHRQLK
101: TRVSAHGRVG ATAAVYTASI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKTTNE
101: TRVSAHGRVG ATAAVYTASI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKTTNE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.