Factsheet for Os10t0418000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 1
nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
plastid: 21433289
nucleus: 23777608
extracellular: 24083427
extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0689800-01
Os08t0192400-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Os08t0192400-00	AT2G36740.1	17470967
AT3G54560.1	Os02t0689800-01	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G246600.1	Wheat	mitochondrion	96.4	96.4
TraesCS1B01G154500.1	Wheat	mitochondrion	96.4	96.4
TraesCS1A01G132400.1	Wheat	mitochondrion	96.4	96.4
GSMUA_Achr1P04720_001	Banana	nucleus	90.65	94.03
Os03t0162200-01	Rice	nucleus	92.09	92.75
GSMUA_Achr8P04480_001	Banana	nucleus	89.21	92.54
GSMUA_Achr1P27260_001	Banana	nucleus	89.21	92.54
AT3G54560.1	Thale cress	cytosol	89.93	91.91
KRH71352	Soybean	mitochondrion	89.93	91.91
KRH32088	Soybean	nucleus	89.93	91.91
GSMUA_Achr3P15210_001	Banana	nucleus	88.49	91.79
GSMUA_Achr8P26920_001	Banana	nucleus	88.49	91.79
Os03t0743400-01	Rice	nucleus	89.93	91.24
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	89.21	91.18
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	89.21	91.18
PGSC0003DMT400049686	Potato	nucleus	90.65	90.65
PGSC0003DMT400051893	Potato	extracellular	89.21	90.51
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.33	90.23
CDY07535	Canola	nucleus	89.21	89.86
CDX67603	Canola	nucleus	89.21	89.86
Bra003188.1-P	Field mustard	nucleus	89.21	89.86
AT2G38810.3	Thale cress	mitochondrion	87.77	89.71
Bra014808.1-P	Field mustard	mitochondrion	87.77	89.71
CDY07697	Canola	mitochondrion	86.33	89.55
Bra000097.1-P	Field mustard	mitochondrion	86.33	89.55
CDY57201	Canola	nucleus	78.42	89.34
CDX78246	Canola	cytosol	87.05	88.97
Bra007080.1-P	Field mustard	cytosol	87.05	88.97
CDY14429	Canola	plastid	84.89	88.06
CDY13216	Canola	mitochondrion	87.77	65.24
Solyc06g084090.2.1	Tomato	nucleus	89.21	61.08
CDX73471	Canola	plastid	87.05	58.17
GSMUA_Achr6P23340_001	Banana	mitochondrion	89.21	53.91

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EntrezGene:4348638	ProteinID:AAM08789.1	ProteinID:AAP53784.1	EMBL:AF193345
EMBL:AK121515	ProteinID:BAF26525.1	ProteinID:BAT10868.1	ProteinID:EAZ16090.1	GO:GO:0000786	GO:GO:0000790
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072
EnsemblPlantsGene:Os10g0418000	EnsemblPlants:Os10t0418000-01	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430
PANTHER:PTHR23430:SF211	UniProt:Q8S857	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI00000A9478	RefSeq:XP_015613173.1
SEG:seg	:	:	:	:	:

Description

Similar to Histone H2A. (Os10t0418000-01)

Coordinates

chr10:+:14678198..14679366

Molecular Weight (calculated)

14612.9 Da

IEP (calculated)

11.115

GRAVY (calculated)

-0.266

Length

139 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAAKAA ADKDKDRKKA PVSRSSRAGI QFPVGRIHRQ LKGRVSANGR VGATAAVYTA AILEYLTAEV LELAGNASKD LKVKRITPRH
101: LQLAIRGDEE LDTLIKGTIA GGGVIPHIHK SLINKTAKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.