Factsheet for Solyc06g084090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g063220.1.1
Solyc04g009830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Solyc04g009830.2.1	AT2G36740.1	17470967
AT3G54560.1	Solyc03g063220.1.1	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051893	Potato	extracellular	67.49	100.0
GSMUA_Achr1P04720_001	Banana	nucleus	62.56	94.78
GSMUA_Achr8P26920_001	Banana	nucleus	61.08	92.54
GSMUA_Achr1P27260_001	Banana	nucleus	61.08	92.54
GSMUA_Achr8P04480_001	Banana	nucleus	60.59	91.79
Os03t0162200-01	Rice	nucleus	62.07	91.3
AT3G54560.1	Thale cress	cytosol	61.08	91.18
GSMUA_Achr3P15210_001	Banana	nucleus	60.1	91.04
Zm00001d027760_P001	Maize	plastid	61.58	90.58
EES07107	Sorghum	mitochondrion	61.58	90.58
Zm00001d033979_P001	Maize	mitochondrion, nucleus	61.08	90.51
Zm00001d013300_P001	Maize	mitochondrion, nucleus	61.08	90.51
Os03t0743400-01	Rice	nucleus	60.59	89.78
AT2G38810.3	Thale cress	mitochondrion	60.1	89.71
Bra000097.1-P	Field mustard	mitochondrion	59.11	89.55
CDY07697	Canola	mitochondrion	59.11	89.55
TraesCS7D01G246600.1	Wheat	mitochondrion	61.08	89.21
TraesCS1B01G154500.1	Wheat	mitochondrion	61.08	89.21
TraesCS1A01G132400.1	Wheat	mitochondrion	61.08	89.21
Os10t0418000-01	Rice	nucleus	61.08	89.21
Bra014808.1-P	Field mustard	mitochondrion	59.61	88.97
CDY57201	Canola	nucleus	53.2	88.52
Bra003188.1-P	Field mustard	nucleus	60.1	88.41
CDY07535	Canola	nucleus	60.1	88.41
CDX67603	Canola	nucleus	60.1	88.41
CDY14429	Canola	plastid	58.13	88.06
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	57.64	87.97
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	58.62	87.5
CDX78246	Canola	cytosol	58.62	87.5
Bra007080.1-P	Field mustard	cytosol	58.62	87.5
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	58.62	87.5
KRH32088	Soybean	nucleus	58.13	86.76
KRH71352	Soybean	mitochondrion	58.13	86.76
Solyc12g006830.1.1	Tomato	nucleus	57.64	86.67
KXG28801	Sorghum	nucleus	55.66	84.96
KXG40126	Sorghum	nucleus	53.69	81.95
Zm00001d007567_P001	Maize	nucleus	47.78	73.48
CDY13216	Canola	mitochondrion	61.08	66.31
CDX73471	Canola	plastid	60.59	59.13
GSMUA_Achr6P23340_001	Banana	mitochondrion	64.04	56.52
TraesCS2D01G571800.1	Wheat	mitochondrion, nucleus, plastid	33.0	55.83
Solyc05g014880.1.1	Tomato	nucleus	24.14	55.68
Zm00001d007553_P001	Maize	nucleus	47.29	50.53
Solyc05g014800.1.1	Tomato	nucleus	30.54	45.93
Solyc05g014870.1.1	Tomato	nucleus	23.15	44.76
Solyc05g014890.1.1	Tomato	mitochondrion	28.08	42.22
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	27.09	41.98
Solyc06g084430.2.1	Tomato	plasma membrane	17.73	37.11
Solyc05g014810.1.1	Tomato	mitochondrion	26.11	35.1
Solyc05g014940.1.1	Tomato	nucleus	24.14	34.27
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	28.57	33.14
Solyc05g014830.1.1	Tomato	nucleus	31.53	21.92

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:K4CAR4
PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF211
SMART:SM00414	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc06g084090.2	EnsemblPlants:Solyc06g084090.2.1	UniParc:UPI000276B7D7	SEG:seg

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4CAR4]

Coordinates

chr6:+:49336067..49339099

Molecular Weight (calculated)

22124.1 Da

IEP (calculated)

10.696

GRAVY (calculated)

-0.267

Length

203 amino acids

Sequence
(BLAST)

001: MNNMKNPCKE ESDALIDLHL DINTPIHDQL IVSISVKLFI ISTHKSTLLR LWENLAENQV TFQIRKMAGK GGKGLVAGKT TAAAAANKEK DKKKPISRSS
101: RAGLQFPVGR IHRQLKTRTS AHGRVGATAA VYSAAILEYL TAEVLELAGN ASKDLKVKRI TPRHLQLAIR GDEELDTLIK GTIAGGGVIP HIHKSLINKT
201: TKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.