Factsheet for Solyc04g009830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g033480.2.1
Solyc06g084090.2.1
Solyc12g006830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	Solyc12g006830.1.1	AT1G52740.1	17470967
AT2G36740.1	Solyc06g084090.2.1	AT3G54560.1	17470967
AT2G36740.1	Solyc03g033480.2.1	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065423	Potato	nucleus	92.5	87.63
VIT_16s0039g02650.t01	Wine grape	nucleus	59.17	70.76
GSMUA_AchrUn_...	Banana	nucleus	52.5	69.74
KRH58568	Soybean	nucleus	60.56	61.41
AT2G36740.1	Thale cress	nucleus	61.11	60.27
CDX75016	Canola	nucleus	61.11	60.11
CDY33188	Canola	nucleus	60.56	59.89
Os08t0192400-00	Rice	nucleus	56.94	56.79
EES14361	Sorghum	nucleus	56.67	56.67
TraesCS7A01G327700.1	Wheat	nucleus	56.67	55.74
TraesCS7D01G324500.1	Wheat	nucleus	56.67	55.74
Zm00001d035012_P002	Maize	nucleus	55.0	54.1
TraesCS7B01G228400.1	Wheat	nucleus	54.72	53.83
HORVU7Hr1G078440.9	Barley	nucleus	56.94	50.74

Protein Annotations

MapMan:12.4.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	UniProt:K4BPD8	PFAM:PF05764	PFAM:PF08265
PANTHER:PTHR13275	SMART:SM00993	EnsemblPlantsGene:Solyc04g009830.2	EnsemblPlants:Solyc04g009830.2.1	UniParc:UPI0002765C0C	InterPro:Vps72/YL1
InterPro:Vps72/YL1_C	SEG:seg	:	:	:	:

Description

SWR1 complex subunit 2 [Source:Projected from Arabidopsis thaliana (AT2G36740) UniProtKB/Swiss-Prot;Acc:F4IP06]

Coordinates

chr4:-:3154104..3161025

Molecular Weight (calculated)

41300.1 Da

IEP (calculated)

5.497

GRAVY (calculated)

-1.168

Length

360 amino acids

Sequence
(BLAST)

001: METSKEGNAV FLDRTSRATR GKRMTKLLDD EVEEDELFWN QEALKDEEND IEYEEEGEAV DVFDSDFDED EPEPDEEGEN EPDDRTQTKK RLTYPGRPPA
101: KKKKKMKALT KTEKAHQENE EAPDPSTPSE HHGAHDDTEA ERTIRKSTRT AVVVKQAERE AIRAALQATT KPIKRKKEGE EKKMTQEEML LEAAQTEVMN
201: LRNLERVLAR EEEVKKKAIV HKAVYNGPQI RYISKNGSSY LEFVNGASFG SQITTTSTPY PQKAVCVVTG LPARYRDPKT GLPYATKEAF KIIRERFAEE
301: RSRAREEKHM DELSQAISGL GFTSKRKRSI PNNRKTSYTP RVFDRFRKFP ADDSMSEDSE

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.