Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g014890.1.1 | Tomato | mitochondrion | 72.38 | 56.3 |
| Solyc05g014800.1.1 | Tomato | nucleus | 71.43 | 55.56 |
| PGSC0003DMT400089480 | Potato | nucleus | 70.48 | 54.41 |
| PGSC0003DMT400094846 | Potato | mitochondrion, nucleus | 69.52 | 53.68 |
| Solyc05g014860.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 64.76 | 51.91 |
| PGSC0003DMT400091186 | Potato | mitochondrion | 65.71 | 50.74 |
| PGSC0003DMT400095704 | Potato | mitochondrion | 65.71 | 50.37 |
| Solyc05g014880.1.1 | Tomato | nucleus | 40.95 | 48.86 |
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 52.38 | 40.74 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 52.38 | 40.74 |
| KRH27119 | Soybean | nucleus | 52.38 | 40.74 |
| HORVU2Hr1G043860.1 | Barley | nucleus | 52.38 | 40.74 |
| Solyc05g014940.1.1 | Tomato | nucleus | 51.43 | 37.76 |
| Solyc05g014850.1.1 | Tomato | cytosol, nucleus, peroxisome, plastid | 61.9 | 37.14 |
| Solyc06g084430.2.1 | Tomato | plasma membrane | 33.33 | 36.08 |
| Solyc12g006830.1.1 | Tomato | nucleus | 43.81 | 34.07 |
| CDY23443 | Canola | mitochondrion | 37.14 | 32.5 |
| Bra029498.1-P | Field mustard | mitochondrion | 37.14 | 32.5 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 31.43 | 31.13 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 40.0 | 27.81 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 19.05 | 27.78 |
| CDY11491 | Canola | mitochondrion | 21.9 | 26.74 |
| Solyc06g084090.2.1 | Tomato | nucleus | 44.76 | 23.15 |
| Solyc05g014830.1.1 | Tomato | nucleus | 58.1 | 20.89 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 13.33 | 10.94 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0040029 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | UniProt:K4BYK5 | PFAM:PF16211 |
| PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF141 | SMART:SM00414 | SUPFAM:SSF47113 |
| EnsemblPlantsGene:Solyc05g014870.1 | EnsemblPlants:Solyc05g014870.1.1 | UniParc:UPI00027666C9 | SEG:seg | : | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4BYK5]
Coordinates
chr5:-:9074551..9075813
Molecular Weight (calculated)
11693.4 Da
IEP (calculated)
11.430
GRAVY (calculated)
-0.472
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGKNRGS NAKRRSCSSK AGLKFPVARI VLELAGIAAR KDKKTRITQR HIQLAIRFDK ELYQFLRNLT IPNGGVIQKI HKILLPNNKS NTSKVVVAAK
101: EEEVD
101: EEEVD
001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
Arabidopsis Description
HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.