CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029498.1-P	Field mustard	mitochondrion	99.17	99.17
HORVU2Hr1G043840.1	Barley	mitochondrion	43.33	72.22
CDY11491	Canola	mitochondrion	51.67	72.09
KRH27119	Soybean	nucleus	76.67	68.15
TraesCS2B01G239700.1	Wheat	mitochondrion	70.0	62.22
TraesCS2A01G214700.1	Wheat	mitochondrion	70.0	62.22
HORVU2Hr1G043860.1	Barley	nucleus	69.17	61.48
PGSC0003DMT400089480	Potato	nucleus	56.67	50.0
CDY22659	Canola	nucleus, plastid	58.33	48.61
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	54.17	47.79
PGSC0003DMT400091186	Potato	mitochondrion	53.33	47.06
Solyc05g014800.1.1	Tomato	nucleus	51.67	45.93
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	50.0	45.8
Solyc05g014880.1.1	Tomato	nucleus	33.33	45.45
PGSC0003DMT400095704	Potato	mitochondrion	49.17	43.07
Solyc05g014890.1.1	Tomato	mitochondrion	47.5	42.22
PGSC0003DMT400090970	Potato	nucleus	45.83	41.04
CDY14429	Canola	plastid	45.0	40.3
CDY07697	Canola	mitochondrion	45.0	40.3
PGSC0003DMT400087364	Potato	mitochondrion	45.0	39.71
CDY21851	Canola	nucleus	44.17	39.55
CDY57201	Canola	nucleus	39.17	38.52
CDY62164	Canola	nucleus	40.0	38.4
CDY62197	Canola	nucleus	42.5	37.78
CDY61820	Canola	nucleus	42.5	37.78
CDY47568	Canola	nucleus	42.5	37.78
CDY40131	Canola	nucleus	42.5	37.78
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	33.33	37.74
CDX67603	Canola	nucleus	43.33	37.68
CDY07535	Canola	nucleus	43.33	37.68
CDX78246	Canola	cytosol	42.5	37.5
Solyc05g014870.1.1	Tomato	nucleus	32.5	37.14
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	38.33	35.94
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	34.17	34.45
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	35.0	33.87
HORVU6Hr1G003750.1	Barley	nucleus	35.83	33.59
PGSC0003DMT400094311	Potato	extracellular	31.67	32.76
CDX99552	Canola	plastid	33.33	31.75
Solyc05g014940.1.1	Tomato	nucleus	37.5	31.47
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	45.83	31.43
CDY13216	Canola	mitochondrion	42.5	27.27
Solyc05g014810.1.1	Tomato	mitochondrion	32.5	25.83
CDX73471	Canola	plastid	42.5	24.52
CDY21852	Canola	nucleus	40.83	23.79
CDY51246	Canola	plastid	37.5	20.45
Solyc05g014830.1.1	Tomato	nucleus	45.0	18.49

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:A0A078GFN6	UniProt:A0A078GFN6	EnsemblPlants:CDY23443	ProteinID:CDY23443
ProteinID:CDY23443.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00022056001	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS
InterPro:IPR009072	PFAM:PF16211	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF195	SMART:SM00414
SUPFAM:SSF47113	UniParc:UPI0004EDCE1D	SEG:seg	:	:	:

Description

BnaC04g49710DBnaC04g49710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFN6]

Coordinates

chrLK032143:-:482822..484643

Molecular Weight (calculated)

12796.5 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.310

Length

120 amino acids

Sequence
(BLAST)

001: MAGRGKTLGS RVAKKATSRS SKAGLQFPVG RIARYLKNCK YAFAGAPVYL AAVLEYLAAE GQQEDEMPRH IQLAVRNDEE LSKLLGDVTI ANGCVMPNIH
101: NLLLPKKAGG GASPRSGDDK

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.