Factsheet for PGSC0003DMT400094846

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089480	Potato	nucleus	93.38	93.38
PGSC0003DMT400091186	Potato	mitochondrion	88.24	88.24
Solyc05g014800.1.1	Tomato	nucleus	80.88	81.48
PGSC0003DMT400095704	Potato	mitochondrion	81.62	81.02
PGSC0003DMT400087364	Potato	mitochondrion	77.21	77.21
Solyc05g014890.1.1	Tomato	mitochondrion	73.53	74.07
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	69.85	72.52
Solyc05g014870.1.1	Tomato	nucleus	53.68	69.52
HORVU2Hr1G043840.1	Barley	mitochondrion	34.56	65.28
PGSC0003DMT400090970	Potato	nucleus	63.24	64.18
KRH27119	Soybean	nucleus	59.56	60.0
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	55.88	59.38
TraesCS2B01G239700.1	Wheat	mitochondrion	58.09	58.52
TraesCS2A01G214700.1	Wheat	mitochondrion	58.09	58.52
HORVU2Hr1G043860.1	Barley	nucleus	58.09	58.52
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	49.26	56.3
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	50.0	54.84
PGSC0003DMT400094311	Potato	extracellular	46.32	54.31
Bra029498.1-P	Field mustard	mitochondrion	47.79	54.17
CDY23443	Canola	mitochondrion	47.79	54.17
CDY11491	Canola	mitochondrion	33.09	52.33
PGSC0003DMT400002745	Potato	nucleus	45.59	45.93
PGSC0003DMT400051893	Potato	extracellular	45.59	45.26
PGSC0003DMT400049686	Potato	nucleus	45.59	44.6
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	34.56	44.34
HORVU6Hr1G003750.1	Barley	nucleus	27.21	28.91

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102582468	EntrezGene:102591121	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:M1DV05	PFAM:PF00125
PFAM:PF16211	EnsemblPlantsGene:PGSC0003DMG400044417	PGSC:PGSC0003DMG400044417	EnsemblPlants:PGSC0003DMT400094846	PRINTS:PR00620	ScanProsite:PS00046
PANTHER:PTHR23430	PANTHER:PTHR23430:SF141	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000296412F	RefSeq:XP_006341737.1
RefSeq:XP_006367648.1	SEG:seg	:	:	:	:

Description

Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400044417]

Coordinates

chr00:+:24431535..24432042

Molecular Weight (calculated)

14774.1 Da

IEP (calculated)

11.234

GRAVY (calculated)

-0.221

Length

136 amino acids

Sequence
(BLAST)

001: MAGKGKNLGS NAKRRSRSSK AGLQFPVARI ARLLKVGKYA KRLGAGAPVF LVVVLESLAG EVLELAGIAA KNDKKTRIIP RHIQLAIRFD KELNQFLRDV
101: TIPNGGVIPR IHNIFLPNNK SNTSKAVADA AHEEED

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.