Factsheet for PGSC0003DMT400095704

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089480	Potato	nucleus	83.21	83.82
PGSC0003DMT400091186	Potato	mitochondrion	81.75	82.35
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	81.02	81.62
Solyc05g014800.1.1	Tomato	nucleus	75.18	76.3
Solyc05g014890.1.1	Tomato	mitochondrion	70.07	71.11
PGSC0003DMT400087364	Potato	mitochondrion	70.07	70.59
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	66.42	69.47
PGSC0003DMT400090970	Potato	nucleus	66.42	67.91
Solyc05g014870.1.1	Tomato	nucleus	50.37	65.71
HORVU2Hr1G043840.1	Barley	mitochondrion	32.12	61.11
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	55.47	59.38
KRH27119	Soybean	nucleus	56.2	57.04
TraesCS2B01G239700.1	Wheat	mitochondrion	55.47	56.3
TraesCS2A01G214700.1	Wheat	mitochondrion	55.47	56.3
HORVU2Hr1G043860.1	Barley	nucleus	55.47	56.3
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	47.45	54.62
PGSC0003DMT400094311	Potato	extracellular	45.99	54.31
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	48.91	54.03
Bra029498.1-P	Field mustard	mitochondrion	43.8	50.0
CDY23443	Canola	mitochondrion	43.07	49.17
CDY11491	Canola	mitochondrion	29.93	47.67
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	36.5	47.17
PGSC0003DMT400002745	Potato	nucleus	41.61	42.22
PGSC0003DMT400051893	Potato	extracellular	41.61	41.61
PGSC0003DMT400049686	Potato	nucleus	41.61	41.01
HORVU6Hr1G003750.1	Barley	nucleus	26.28	28.12

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102580684	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_C	InterPro:IPR009072	UniProt:M1DWW3	PFAM:PF00125	PFAM:PF16211	EnsemblPlantsGene:PGSC0003DMG400045275
PGSC:PGSC0003DMG400045275	EnsemblPlants:PGSC0003DMT400095704	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF141	SMART:SM00414
SUPFAM:SSF47113	UniParc:UPI00029614C5	RefSeq:XP_006341803.1	SEG:seg	:	:

Description

Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400045275]

Coordinates

chr5:-:12448457..12448967

Molecular Weight (calculated)

15147.6 Da

IEP (calculated)

10.820

GRAVY (calculated)

-0.040

Length

137 amino acids

Sequence
(BLAST)

001: MVGKGKNLGS NAKRRSHSSK DGLQFLVAHI ARFLKVGKYA KRVGVGAPVL LAVVLEYLAA EVLELAGIAA RNDKKTWIIP RHIQLAIRFD KELNQFLRDL
101: TIPNGGVIQR IHNIFLPNNK SNTSKVVVVA IAQEEED

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.