Factsheet for Solyc05g014810.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014880.1.1	Tomato	nucleus	44.37	76.14
HORVU2Hr1G043840.1	Barley	mitochondrion	24.5	51.39
Solyc05g014800.1.1	Tomato	nucleus	45.7	51.11
Solyc05g014890.1.1	Tomato	mitochondrion	42.38	47.41
HORVU2Hr1G043860.1	Barley	nucleus	39.74	44.44
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	37.09	43.75
TraesCS2B01G239700.1	Wheat	mitochondrion	39.07	43.7
TraesCS2A01G214700.1	Wheat	mitochondrion	39.07	43.7
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	49.67	42.86
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	37.09	42.75
KRH27119	Soybean	nucleus	37.75	42.22
CDY11491	Canola	mitochondrion	23.18	40.7
Solyc05g014870.1.1	Tomato	nucleus	27.81	40.0
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	27.15	38.68
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	30.46	38.66
Solyc12g006830.1.1	Tomato	nucleus	34.44	38.52
PGSC0003DMT400094311	Potato	extracellular	28.48	37.07
Solyc05g014940.1.1	Tomato	nucleus	35.1	37.06
Bra029498.1-P	Field mustard	mitochondrion	26.49	33.33
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	27.15	33.06
CDY23443	Canola	mitochondrion	25.83	32.5
Solyc06g084430.2.1	Tomato	plasma membrane	17.22	26.8
Solyc06g084090.2.1	Tomato	nucleus	35.1	26.11
Solyc05g014830.1.1	Tomato	nucleus	49.01	25.34
HORVU6Hr1G003750.1	Barley	nucleus	20.53	24.22

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:IPR009072	UniProt:K4BYJ9	PFAM:PF00125	PRINTS:PR00620
PANTHER:PTHR23430	PANTHER:PTHR23430:SF141	SMART:SM00414	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc05g014810.1	EnsemblPlants:Solyc05g014810.1.1
UniParc:UPI00027666C3	SEG:seg	:	:	:	:

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4BYJ9]

Coordinates

chr5:-:9016391..9017104

Molecular Weight (calculated)

16497.7 Da

IEP (calculated)

11.647

GRAVY (calculated)

-0.003

Length

151 amino acids

Sequence
(BLAST)

001: MVGKVKNHGS NAKRRSRSSK AGLKFPLTRI ARFLKVGKYA KCVCAGAPVF HAIVIEYLAV KMVGKGKNLG SNAKRRSHSS KAGLKFPMAH IAQFLKVGKY
101: AKRVSAGAPV FLVAVLEYLA VEVLELAGIA ARNEKKTRIT PRHIQLAIRF D

Best Arabidopsis Sequence Match ( AT4G27230.1 )
(BLAST)

001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D

Arabidopsis Description

HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.