Factsheet for Solyc05g014830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014800.1.1	Tomato	nucleus	34.93	75.56
Solyc05g014890.1.1	Tomato	mitochondrion	33.9	73.33
PGSC0003DMT400087364	Potato	mitochondrion	32.88	70.59
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	30.14	67.18
Solyc05g014880.1.1	Tomato	nucleus	20.21	67.05
Solyc05g014870.1.1	Tomato	nucleus	20.89	58.1
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	33.22	55.43
KRH27119	Soybean	nucleus	23.97	51.85
HORVU2Hr1G043840.1	Barley	mitochondrion	12.67	51.39
TraesCS2B01G239700.1	Wheat	mitochondrion	23.63	51.11
TraesCS2A01G214700.1	Wheat	mitochondrion	23.63	51.11
HORVU2Hr1G043860.1	Barley	nucleus	23.63	51.11
Solyc05g014810.1.1	Tomato	mitochondrion	25.34	49.01
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	17.12	47.17
Solyc05g014940.1.1	Tomato	nucleus	22.95	46.85
Bra029498.1-P	Field mustard	mitochondrion	18.84	45.83
CDY23443	Canola	mitochondrion	18.49	45.0
Solyc12g006830.1.1	Tomato	nucleus	20.55	44.44
Solyc06g084430.2.1	Tomato	plasma membrane	14.38	43.3
CDY11491	Canola	mitochondrion	11.3	38.37
Solyc06g084090.2.1	Tomato	nucleus	21.92	31.53
HORVU6Hr1G003750.1	Barley	nucleus	11.3	25.78

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072	UniProt:K4BYK1	PFAM:PF00125
PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF141	SMART:SM00414	SUPFAM:SSF47113
EnsemblPlantsGene:Solyc05g014830.1	EnsemblPlants:Solyc05g014830.1.1	UniParc:UPI00027666C5	SEG:seg	:	:

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4BYK1]

Coordinates

chr5:-:9036043..9039696

Molecular Weight (calculated)

33017.8 Da

IEP (calculated)

10.752

GRAVY (calculated)

-0.023

Length

292 amino acids

Sequence
(BLAST)

001: MVSEGKNLGS NAKRRSRSSK ASLKFPVARI ARFLKVGKYA KRVGAGAPVF LADVLEYLAV EVLELAGIAA RNDKKTRITP RHIQLAIRFD KELYQFLRDV
101: TILNGGVIQK IHKILQPNNK SNASKAVVAA DCQLRYDLYF TTMHLLMSLR YFGWFEDSSM RLLSCIHHLH RIILFVKASL KFPVARIARF LKVGKYAKHV
201: GAGALVFLVV VLEYLAVEVL ELAGIAERND KKTRITPRHI QLAIRFDKEL YQFLRDVTIP NGGVIPKIHK NFLPHNKSNT SKVVATAQEE ED

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.