Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | CDX75016 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY33188 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | CDY08401 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | CDY52874 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003188.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY07535 | Canola | nucleus | 100.0 | 100.0 |
| AT3G54560.1 | Thale cress | cytosol | 97.1 | 98.53 |
| CDY57201 | Canola | nucleus | 86.23 | 97.54 |
| CDX78246 | Canola | cytosol | 92.75 | 94.12 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.41 | 91.73 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.13 | 90.44 |
| KRH32088 | Soybean | nucleus | 89.13 | 90.44 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.13 | 90.44 |
| KRH71352 | Soybean | mitochondrion | 89.13 | 90.44 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 86.96 | 89.55 |
| CDY07697 | Canola | mitochondrion | 86.96 | 89.55 |
| Os10t0418000-01 | Rice | nucleus | 89.86 | 89.21 |
| PGSC0003DMT400051893 | Potato | extracellular | 88.41 | 89.05 |
| CDY14429 | Canola | plastid | 86.23 | 88.81 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 89.13 | 88.49 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 89.13 | 88.49 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 89.13 | 88.49 |
| Os03t0162200-01 | Rice | nucleus | 88.41 | 88.41 |
| Zm00001d027760_P001 | Maize | plastid | 88.41 | 88.41 |
| EES07107 | Sorghum | mitochondrion | 88.41 | 88.41 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 85.51 | 88.06 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 85.51 | 88.06 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 85.51 | 88.06 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 85.51 | 88.06 |
| PGSC0003DMT400049686 | Potato | nucleus | 86.23 | 85.61 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 84.78 | 85.4 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 84.78 | 85.4 |
| Os03t0743400-01 | Rice | nucleus | 84.78 | 85.4 |
| CDY21851 | Canola | nucleus | 81.16 | 83.58 |
| KXG28801 | Sorghum | nucleus | 80.43 | 83.46 |
| CDY62164 | Canola | nucleus | 75.36 | 83.2 |
| CDY62197 | Canola | nucleus | 80.43 | 82.22 |
| CDY61820 | Canola | nucleus | 80.43 | 82.22 |
| CDY47568 | Canola | nucleus | 80.43 | 82.22 |
| CDY40131 | Canola | nucleus | 80.43 | 82.22 |
| KXG40126 | Sorghum | nucleus | 78.26 | 81.2 |
| Zm00001d007567_P001 | Maize | nucleus | 72.46 | 75.76 |
| CDY13216 | Canola | mitochondrion | 96.38 | 71.12 |
| CDX99552 | Canola | plastid | 62.32 | 68.25 |
| CDX73471 | Canola | plastid | 92.75 | 61.54 |
| Solyc06g084090.2.1 | Tomato | nucleus | 88.41 | 60.1 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 48.55 | 55.83 |
| Zm00001d007553_P001 | Maize | nucleus | 70.29 | 51.05 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 84.78 | 50.87 |
| CDY21852 | Canola | nucleus | 73.19 | 49.03 |
| CDY22659 | Canola | nucleus, plastid | 47.1 | 45.14 |
| CDY23443 | Canola | mitochondrion | 37.68 | 43.33 |
| CDY11491 | Canola | mitochondrion | 25.36 | 40.7 |
| CDY51246 | Canola | plastid | 34.06 | 21.36 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078EZN9 | UniProt:A0A078EZN9 | EnsemblPlants:CDX67603 | ProteinID:CDX67603 |
| ProteinID:CDX67603.1 | ProteinID:CDY07535.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00098749001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF211 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0002541439 | SEG:seg | : |
Description
BnaA07g16430DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078EZN9]
Coordinates
chrLK031787:+:1179726..1181130
Molecular Weight (calculated)
14789.1 Da
IEP (calculated)
10.955
GRAVY (calculated)
-0.405
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKDKDKKKP MSRSARAGIQ FPVGRIHRQL KTRVSAHGRV GATAAVYTAS ILEYLTAEVL ELAGNASKDL KVKRITPRHL
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTTNE
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTTNE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.