Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G38810.3 | Thale cress | mitochondrion | 58.33 | 51.47 |
| Bra000097.1-P | Field mustard | mitochondrion | 56.67 | 50.75 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 56.67 | 50.75 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 56.67 | 50.75 |
| CDY07697 | Canola | mitochondrion | 56.67 | 50.75 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 56.67 | 50.75 |
| CDY14429 | Canola | plastid | 56.67 | 50.75 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 58.33 | 50.36 |
| AT3G54560.1 | Thale cress | cytosol | 56.67 | 50.0 |
| KRH71352 | Soybean | mitochondrion | 56.67 | 50.0 |
| KRH32088 | Soybean | nucleus | 56.67 | 50.0 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 55.83 | 50.0 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 55.83 | 50.0 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 55.0 | 49.62 |
| Bra014808.1-P | Field mustard | mitochondrion | 55.83 | 49.26 |
| PGSC0003DMT400051893 | Potato | extracellular | 55.83 | 48.91 |
| CDY07535 | Canola | nucleus | 55.83 | 48.55 |
| Bra003188.1-P | Field mustard | nucleus | 55.83 | 48.55 |
| CDX67603 | Canola | nucleus | 55.83 | 48.55 |
| CDX78246 | Canola | cytosol | 55.0 | 48.53 |
| Bra007080.1-P | Field mustard | cytosol | 55.0 | 48.53 |
| PGSC0003DMT400049686 | Potato | nucleus | 55.83 | 48.2 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 54.17 | 47.79 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 54.17 | 47.79 |
| CDY57201 | Canola | nucleus | 47.5 | 46.72 |
| TraesCS3D01G539500.1 | Wheat | cytosol, mitochondrion, nucleus | 36.67 | 36.36 |
| CDY13216 | Canola | mitochondrion | 55.83 | 35.83 |
| Solyc06g084090.2.1 | Tomato | nucleus | 55.83 | 33.0 |
| TraesCS6D01G040300.1 | Wheat | nucleus | 40.0 | 32.65 |
| CDX73471 | Canola | plastid | 55.0 | 31.73 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 55.83 | 29.13 |
| TraesCS3D01G521700.1 | Wheat | nucleus | 39.17 | 26.7 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF16211 |
| PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF7 | SMART:SM00414 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS2D01G571800 |
| EnsemblPlants:TraesCS2D01G571800.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:638094093..638094846
Molecular Weight (calculated)
12791.7 Da
IEP (calculated)
9.764
GRAVY (calculated)
-0.212
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGKGGKPLL AAKSEKYKAN ISKASKAGMQ QTIVGDKRVC PRAAVYTAAI LEYLTAEILE LAGDSCKSEN LEDITPCHLQ LAIRGDEDLN KLIKGTIPSG
101: GVIPKIAKAL LDKRRAGIKE
101: GVIPKIAKAL LDKRRAGIKE
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.