Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G040300.1 | Wheat | nucleus | 69.42 | 57.14 |
| Solyc06g084430.2.1 | Tomato | plasma membrane | 36.36 | 45.36 |
| TraesCS3D01G521700.1 | Wheat | nucleus | 60.33 | 41.48 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 47.11 | 41.01 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 36.36 | 36.67 |
| CDY51246 | Canola | plastid | 39.67 | 21.82 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF192 | SMART:SM00414 |
| SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS3D01G539500 | EnsemblPlants:TraesCS3D01G539500.1 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:611416017..611418441
Molecular Weight (calculated)
13246.5 Da
IEP (calculated)
10.516
GRAVY (calculated)
-0.090
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGKSGERK KAVTWCTKAG LQILVDRIGR YLKKGRDTDR VGPGALVYLA AFLEYLAVKM LELAGKVAKD NKKTCIMSRH LLLATRNDEE LSKLLDGITI
101: AHGGVLPNIH SVLFSKKANM H
101: AHGGVLPNIH SVLFSKKANM H
001: MDSGTKVKKG AAGRRSGGGP KKKPVSRSVK SGLQFPVGRI GRYLKKGRYS KRVGTGAPVY LAAVLEYLAA EVLELAGNAA RDNKKNRIIP RHVLLAVRND
101: EELGTLLKGV TIAHGGVLPN INPILLPKKS EKAASTTKTP KSPSKATKSP KKS
101: EELGTLLKGV TIAHGGVLPN INPILLPKKS EKAASTTKTP KSPSKATKSP KKS
Arabidopsis Description
HTA12Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4KCF4]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.