Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78246 | Canola | cytosol | 100.0 | 100.0 |
| Bra014808.1-P | Field mustard | mitochondrion | 93.38 | 93.38 |
| Bra003188.1-P | Field mustard | nucleus | 94.12 | 92.75 |
| Bra000097.1-P | Field mustard | mitochondrion | 88.97 | 90.3 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 87.5 | 89.47 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.24 | 88.24 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.24 | 88.24 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 86.76 | 88.06 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 86.76 | 88.06 |
| KRH71352 | Soybean | mitochondrion | 87.5 | 87.5 |
| KRH32088 | Soybean | nucleus | 87.5 | 87.5 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 86.03 | 87.31 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 86.03 | 87.31 |
| Os10t0418000-01 | Rice | nucleus | 88.97 | 87.05 |
| PGSC0003DMT400051893 | Potato | extracellular | 87.5 | 86.86 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 85.29 | 86.57 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 88.24 | 86.33 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 88.24 | 86.33 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 88.24 | 86.33 |
| KXG28801 | Sorghum | nucleus | 83.82 | 85.71 |
| Os03t0162200-01 | Rice | nucleus | 86.76 | 85.51 |
| Zm00001d027760_P001 | Maize | plastid | 86.76 | 85.51 |
| EES07107 | Sorghum | mitochondrion | 86.76 | 85.51 |
| Bra018984.1-P | Field mustard | nucleus | 84.56 | 85.19 |
| Bra030365.1-P | Field mustard | nucleus | 84.56 | 85.19 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 84.56 | 83.94 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 84.56 | 83.94 |
| PGSC0003DMT400049686 | Potato | nucleus | 85.29 | 83.45 |
| Os03t0743400-01 | Rice | nucleus | 83.82 | 83.21 |
| KXG40126 | Sorghum | nucleus | 77.21 | 78.95 |
| Zm00001d007567_P001 | Maize | nucleus | 71.32 | 73.48 |
| CDX73471 | Canola | plastid | 100.0 | 65.38 |
| Solyc06g084090.2.1 | Tomato | nucleus | 87.5 | 58.62 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 48.53 | 55.0 |
| Zm00001d007553_P001 | Maize | nucleus | 70.59 | 50.53 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 84.56 | 50.0 |
| Bra029498.1-P | Field mustard | mitochondrion | 37.5 | 42.5 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EnsemblPlantsGene:Bra007080 | EnsemblPlants:Bra007080.1 | EnsemblPlants:Bra007080.1-P | GO:GO:0000003 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005730 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0016048 | GO:GO:0042742 | GO:GO:0044030 |
| GO:GO:0045892 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | UniProt:M4CS88 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF211 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000189DA57 | SEG:seg | : |
Description
AT3G54560 (E=1e-062) HTA11 | HTA11; DNA binding
Coordinates
chrA09:+:27185010..27185686
Molecular Weight (calculated)
14568.0 Da
IEP (calculated)
11.052
GRAVY (calculated)
-0.315
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLI ATKTMAGNKD KDKDKKKPIT RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKAIKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKAIKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.