CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
endoplasmic reticulum 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63015	Soybean	nucleus	98.52	99.25
KRH16015	Soybean	nucleus	90.37	95.31
KRH52500	Soybean	nucleus	95.56	94.85
VIT_04s0008g04700.t01	Wine grape	nucleus	94.07	94.78
KRH05097	Soybean	nucleus	93.33	94.03
PGSC0003DMT400002745	Potato	nucleus	91.11	91.11
Solyc12g006830.1.1	Tomato	nucleus	91.11	91.11
GSMUA_Achr10P...	Banana	nucleus	90.37	89.71
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	85.19	84.56
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	85.19	84.56
KRH32088	Soybean	nucleus	84.44	83.82
KRH71352	Soybean	mitochondrion	84.44	83.82
KRH27119	Soybean	nucleus	52.59	52.59

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100500133	MapMan:12.1.2	EMBL:ACUP02003588	EMBL:BT090975	UniProt:C6T0M0
EnsemblPlantsGene:GLYMA_06G214900	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	EnsemblPlants:KRH54863	ProteinID:KRH54863
ProteinID:KRH54863.1	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF105	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000189DA72	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:22112460..22114655

Molecular Weight (calculated)

14350.5 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.361

Length

135 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI TGKTSAANNK DKDKKKPISR SSRAGLQFPV GRIHRLLKSR TTANGRVGAT AAVYSAAILE YLTAEVLELA GNASKDLKVK RITPRHLQLA
101: IRGDEELDTL IKGTIAGGGV IPHIHKSLIN KSSKE

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.