Factsheet for AT1G52740.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018984.1-P	Field mustard	nucleus	97.76	97.04
Bra030365.1-P	Field mustard	nucleus	97.76	97.04
CDY40131	Canola	nucleus	97.76	97.04
CDY61820	Canola	nucleus	97.76	97.04
CDY62164	Canola	nucleus	90.3	96.8
CDY47568	Canola	nucleus	97.01	96.3
CDY62197	Canola	nucleus	97.01	96.3
VIT_04s0008g04700.t01	Wine grape	nucleus	88.81	88.81
KRH52500	Soybean	nucleus	89.55	88.24
PGSC0003DMT400002745	Potato	nucleus	87.31	86.67
Solyc12g006830.1.1	Tomato	nucleus	87.31	86.67
GSMUA_Achr10P...	Banana	nucleus	87.31	86.03
AT3G54560.1	Thale cress	cytosol	85.07	83.82
AT2G38810.3	Thale cress	mitochondrion	80.6	79.41
AT4G13570.2	Thale cress	cytoskeleton, cytosol, nucleus	52.99	57.26

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EntrezGene:841707	UniProt:A0A178WNI4	ProteinID:AAG52265.1	ProteinID:AEE32847.1
ArrayExpress:AT1G52740	EnsemblPlantsGene:AT1G52740	RefSeq:AT1G52740	TAIR:AT1G52740	RefSeq:AT1G52740-TAIR-G	EnsemblPlants:AT1G52740.1
TAIR:AT1G52740.1	EMBL:AY054557	EMBL:AY058147	EMBL:AY064631	EMBL:AY084390	Unigene:At.22624
GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006342	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0042742	GO:GO:0046982	Symbol:HTA9
InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072
RefSeq:NP_175683.1	ProteinID:OAP19784.1	PFAM:PF00125	PFAM:PF16211	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF55	UniProt:Q9C944
SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000005EAEA	SEG:seg	:	:

Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]

Coordinates

chr1:+:19645236..19646485

Molecular Weight (calculated)

14272.5 Da

IEP (calculated)

11.014

GRAVY (calculated)

-0.341

Length

134 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.