Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G54560.1 | Thale cress | cytosol | 60.48 | 55.15 |
| VIT_09s0002g05770.t01 | Wine grape | endoplasmic reticulum, extracellular | 56.45 | 55.12 |
| AT2G38810.3 | Thale cress | mitochondrion | 59.68 | 54.41 |
| AT1G52740.1 | Thale cress | nucleus | 57.26 | 52.99 |
| EES08219 | Sorghum | cytosol | 43.55 | 50.47 |
| CDX99552 | Canola | plastid | 49.19 | 48.41 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 58.06 | 42.11 |
| Zm00001d025335_P001 | Maize | cytosol | 43.55 | 37.76 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 41.94 | 23.42 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EntrezGene:826990 | ProteinID:AEE83295.1 | ArrayExpress:AT4G13570 | EnsemblPlantsGene:AT4G13570 |
| RefSeq:AT4G13570 | TAIR:AT4G13570 | RefSeq:AT4G13570-TAIR-G | EnsemblPlants:AT4G13570.2 | TAIR:AT4G13570.2 | Unigene:At.54308 |
| UniProt:F4JT33 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | Symbol:HTA4 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | RefSeq:NP_001190717.1 | PFAM:PF00125 | PFAM:PF16211 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009047 |
| PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF76 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0001E92F6B |
Description
HTA4Histone H2A [Source:UniProtKB/TrEMBL;Acc:F4JT33]
Coordinates
chr4:+:7884516..7885982
Molecular Weight (calculated)
13795.0 Da
IEP (calculated)
9.524
GRAVY (calculated)
-0.002
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMVEGEMTT PYPPIVTLIN GSRSLSPAIT NYKCIRFQVA RIHKQLKNRV SAHSSVGATD VVYMTSILEY LTTEVLQLAE NTSKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIIGGSVI PHIH
101: RGDEELDTLI KGTIIGGSVI PHIH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.