Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG98203 | Soybean | nucleus | 82.56 | 82.08 |
KRH30163 | Soybean | nucleus | 80.81 | 80.35 |
CDY70943 | Canola | nucleus | 72.67 | 73.1 |
Bra006766.1-P | Field mustard | nucleus | 71.51 | 71.93 |
CDY57389 | Canola | mitochondrion | 71.51 | 71.93 |
AT5G37055.1 | Thale cress | mitochondrion | 71.51 | 71.93 |
Bra002649.1-P | Field mustard | mitochondrion | 70.93 | 71.34 |
CDY32983 | Canola | mitochondrion | 70.93 | 71.34 |
Solyc03g033480.2.1 | Tomato | nucleus | 68.6 | 69.01 |
PGSC0003DMT400058037 | Potato | nucleus | 68.6 | 69.01 |
Bra031327.1-P | Field mustard | mitochondrion | 25.58 | 67.69 |
CDX99412 | Canola | mitochondrion | 25.58 | 67.69 |
EES16500 | Sorghum | cytosol, nucleus, plastid | 67.44 | 67.05 |
EES16499 | Sorghum | mitochondrion | 66.28 | 66.28 |
CDY40293 | Canola | mitochondrion | 25.0 | 66.15 |
CDX99372 | Canola | mitochondrion | 25.0 | 66.15 |
Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 66.28 | 65.14 |
GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 75.58 | 65.0 |
CDX77159 | Canola | mitochondrion | 24.42 | 64.62 |
TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 64.53 | 64.16 |
TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 64.53 | 64.16 |
Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 63.95 | 63.58 |
CDY60020 | Canola | cytosol | 46.51 | 61.07 |
HORVU5Hr1G047490.2 | Barley | plastid | 65.12 | 60.22 |
TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 62.21 | 56.61 |
Bra032836.1-P | Field mustard | mitochondrion | 42.44 | 56.15 |
KXG22781 | Sorghum | plastid | 29.07 | 52.63 |
Protein Annotations
EntrezGene:100245318 | wikigene:100245318 | MapMan:12.4.4.3 | ProteinID:CBI29882 | ProteinID:CBI29882.3 | ncoils:Coil |
UniProt:D7TI06 | EMBL:FN595991 | GO:GO:0000003 | GO:GO:0000812 | GO:GO:0003674 | GO:GO:0003682 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 |
GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0019538 | GO:GO:0031063 | GO:GO:0031491 | GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 |
GO:GO:0042826 | GO:GO:0043486 | GO:GO:0046872 | GO:GO:0048638 | InterPro:IPR007529 | EntrezGene:LOC100245318 |
wikigene:LOC100245318 | PFAM:PF04438 | PFscan:PS51083 | PANTHER:PTHR13093 | SUPFAM:SSF144232 | UniParc:UPI00015CAAD3 |
ArrayExpress:VIT_08s0007g08060 | EnsemblPlantsGene:VIT_08s0007g08060 | EnsemblPlants:VIT_08s0007g08060.t01 | unigene:Vvi.3094 | RefSeq:XP_002283156 | RefSeq:XP_002283156.1 |
InterPro:Znf_HIT | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:+:21405007..21406789
Molecular Weight (calculated)
19043.2 Da
IEP (calculated)
8.290
GRAVY (calculated)
-0.723
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDSGSLRR MSTRTRKVAS RMAAALASTD NRNQAALARL EALENDNAGM ETIDVNDDED ASLDDDDEGY AQKRQSKGTK RTTRQAKALE NARKAPRTFL
101: ELVHEANLES LPPHVPSYLR AAVGPPSSTS RRHFCTVCGF AANYTCVRCG TRFCSTRCQN IHNDTRCLKF VA
101: ELVHEANLES LPPHVPSYLR AAVGPPSSTS RRHFCTVCGF AANYTCVRCG TRFCSTRCQN IHNDTRCLKF VA
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.