Factsheet for Bra032836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra006766.1-P
Bra012351.1-P
Bra024548.1-P
Bra030818.1-P
Bra031327.1-P
Bra032836.1-P
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	Bra012351.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra024548.1-P	AT1G22920.1	21798944
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17142478
AT5G37055.1	Bra034727.1-P	AT3G12810.1	17470967
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17142478
AT5G37055.1	Bra030818.1-P	AT3G33520.1	17470967
AT5G37055.1	Bra002649.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra006766.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra031327.1-P	AT5G37055.1	17470967
AT5G37055.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99412	Canola	mitochondrion	49.23	98.46
Bra031327.1-P	Field mustard	mitochondrion	48.46	96.92
CDY40293	Canola	mitochondrion	48.46	96.92
CDX77159	Canola	mitochondrion	46.92	93.85
Bra002649.1-P	Field mustard	mitochondrion	80.77	61.4
Bra006766.1-P	Field mustard	nucleus	76.15	57.89
AT5G37055.1	Thale cress	mitochondrion	73.85	56.14
KRG98203	Soybean	nucleus	58.46	43.93
KRH30163	Soybean	nucleus	57.69	43.35
VIT_08s0007g08060.t01	Wine grape	mitochondrion	56.15	42.44
PGSC0003DMT400058037	Potato	nucleus	54.62	41.52
Solyc03g033480.2.1	Tomato	nucleus	53.85	40.94
EES16499	Sorghum	mitochondrion	50.0	37.79
EES16500	Sorghum	cytosol, nucleus, plastid	50.0	37.57
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	50.0	37.57
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	50.0	37.57
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	57.69	37.5
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	49.23	36.99
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	49.23	36.57
HORVU5Hr1G047490.2	Barley	plastid	49.23	34.41
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	50.0	34.39
KXG22781	Sorghum	plastid	18.46	25.26

Protein Annotations

EnsemblPlants:Bra032836.1	EnsemblPlants:Bra032836.1-P	EnsemblPlantsGene:Bra032836	SEG:seg	UniParc:UPI000254258D	UniProt:M4EVK3
MapMan:12.4.4.3	:	:	:	:	:

Description

AT5G37055 (E=3e-035) ATSWC6, SEF | SEF (SERRATED LEAVES AND EARLY FLOWERING)

Coordinates

chrA09:+:12517755..12518527

Molecular Weight (calculated)

14509.1 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.868

Length

130 amino acids

Sequence
(BLAST)

001: MANRRVSSRT RKVATKMAAA LTSTDNRTQA AIARLEALEN DNGAVEVVDL NDDEEASLDE EDDLGYVQKK QQKGSKRKTR QAKALEARKA PKSFTELLQE
101: FCSCNIPNPL SKTSPTKRTI RIIESIRDTN

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.