Factsheet for Bra034727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002649.1-P
Bra003188.1-P
Bra006766.1-P
Bra014808.1-P
Bra018984.1-P
Bra030365.1-P
Bra030818.1-P
Bra031327.1-P
Bra032836.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12810.1	Bra018984.1-P	AT1G52740.1	17470967
AT3G12810.1	Bra030365.1-P	AT1G52740.1	17470967
AT3G12810.1	Bra030818.1-P	AT3G33520.1	17142478
AT3G12810.1	Bra030818.1-P	AT3G33520.1	17470967
AT3G12810.1	Bra003188.1-P	AT3G54560.1	17470967
AT3G12810.1	Bra014808.1-P	AT3G54560.1	17470967
AT3G12810.1	Bra002649.1-P	AT5G37055.1	17142478
AT3G12810.1	Bra006766.1-P	AT5G37055.1	17142478
AT3G12810.1	Bra031327.1-P	AT5G37055.1	17142478
AT3G12810.1	Bra032836.1-P	AT5G37055.1	17142478
AT3G12810.1	Bra002649.1-P	AT5G37055.1	17470967
AT3G12810.1	Bra006766.1-P	AT5G37055.1	17470967
AT3G12810.1	Bra031327.1-P	AT5G37055.1	17470967
AT3G12810.1	Bra032836.1-P	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08401	Canola	nucleus	99.01	99.7
AT3G12810.1	Thale cress	nucleus	86.18	84.67
VIT_08s0007g06370.t01	Wine grape	nucleus	64.73	63.69
Solyc03g063220.1.1	Tomato	nucleus	50.52	63.43
KRH71872	Soybean	nucleus	63.15	62.47
KRH38118	Soybean	nucleus	62.95	62.03
OQU85588	Sorghum	nucleus	54.23	54.02
Zm00001d017660_P021	Maize	nucleus	53.84	52.72
Zm00001d051507_P007	Maize	nucleus	53.19	52.11
GSMUA_Achr3P26510_001	Banana	nucleus	41.31	51.26
TraesCS7A01G544700.1	Wheat	nucleus	54.19	50.74
TraesCS7D01G531100.1	Wheat	nucleus	54.38	50.58
TraesCS7B01G468100.1	Wheat	nucleus	54.23	50.44
Os02t0689800-01	Rice	nucleus	25.85	48.97
Bra012099.1-P	Field mustard	cytosol	12.18	31.91
Bra017422.1-P	Field mustard	cytosol	11.14	29.53
Bra040221.1-P	Field mustard	nucleus	14.02	26.98
Bra020751.1-P	Field mustard	nucleus	14.07	26.97
Bra002173.1-P	Field mustard	nucleus	14.07	26.69
Bra023689.1-P	Field mustard	nucleus	14.07	25.79
Bra040237.1-P	Field mustard	nucleus	13.67	25.09
Bra011311.1-P	Field mustard	nucleus	12.98	21.58
Bra014632.1-P	Field mustard	cytosol	15.65	20.87
Bra004881.1-P	Field mustard	nucleus	6.54	20.4
Bra007814.1-P	Field mustard	nucleus	13.62	20.15
Bra007318.1-P	Field mustard	nucleus	14.71	19.85
Bra037150.1-P	Field mustard	nucleus	11.69	19.68
Bra037208.1-P	Field mustard	nucleus	14.26	17.08
Bra000409.1-P	Field mustard	plastid	14.81	13.83
Bra039296.1-P	Field mustard	plastid	14.31	13.52
Bra027574.1-P	Field mustard	nucleus	14.31	13.01
Bra000114.1-P	Field mustard	nucleus	15.45	9.53

Protein Annotations

Gene3D:1.10.10.60	MapMan:12.4.4.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra034727	EnsemblPlants:Bra034727.1
EnsemblPlants:Bra034727.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0006950
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0030312	GO:GO:0042742	GO:GO:0046686
InterPro:HSA_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014012	InterPro:IPR017877	InterPro:IPR038718	UniProt:M4F0Y2	InterPro:Myb-like_dom	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFAM:PF07529	PFscan:PS50090	PFscan:PS51192	PFscan:PS51194
PFscan:PS51204	PANTHER:PTHR10799	PANTHER:PTHR10799:SF935	SMART:SM00487	SMART:SM00490	SMART:SM00573
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0002548185	SEG:seg

Description

AT3G12810 (E=0.0) PIE1, SRCAP, chr13 | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA05:-:21180182..21188343

Molecular Weight (calculated)

230001.0 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.711

Length

2019 amino acids

Sequence
(BLAST)

0001: MASRGGKSIP DSAMSSKGSK SRPDSDSKPK RHKTLEAPKE PRRPKTHWDH VIEEMIWLSK DFESERKWKL AQAKKVALRA SKGMVDQASR EERKLKEEEQ
0101: RLRKVALNIS KDVKKFWIKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKHGH NESPKPILAI ESKSDEERAE ETPSELNACL
0201: ESETLDVDED YDINPEDASE DDEDTIEEDE KHFTKQERQE ELEALQNEVD LPVEELLRRY TSGRVSGETS PERDENEANL ASVGEDDIEG DKNNLTASEE
0301: TEGSPSVRRS NDSFDHLAVS ETHTPDHKPG PKTASVKSGK EDQTYDFNDE QEDVDFVAAT GEEKDDETTL SVEEELAKAD SVDPEDEIAL LQKESEMSIE
0401: ELLARYKEDF GGKDLSEDDS SDIRQQADSD DENVESAECK PALQPCSEKD EGTSNEIKED DAKDSSDKIA DAAAAARSAQ PTGFTYSTTK VRTKLPFLLK
0501: HSLREYQHIG LDWLVTMYEK RLNGILADEM GLGKTIMTIA LLAHLACDKG IWGPHLIVVP TSVMLNWETE FLKWCPAFKI LTYFGSAKER KLKRQGWMKL
0601: NSFHVCITTY RLVIQDSKMF KRKKWKYLIL DEAHLIKNWK SQRWQTLLNF NSKRRILLTG TPLQNDLMEL WSLMHFLMPH VFQSHQEFKD WFCNPIAGMV
0701: EGQDKINREV IDRLHNVLRP FLLRRLKRDV EKQLPQKHEH VIFCRLSKRQ RNLYEDFIAS TETQATLNSG SFFGMISIIM QLRKVCNHPD LFEGRPIVSS
0801: FDMPGIDVQL SSRICSLLLK SPFSRVDLED LGFVFTHHDF SMTAWEGDEI KAISTPSDLI KQRVDLKDNP EEVPLSLVNR KNLQGTSIFE EIRKAVFEER
0901: VKESKDRAAA IAWWNSLRCR RKPTYSTSLR TLLTIKGPLD DIRHLKANRP SYMYSSMLAD IVLSPIERFQ KVIELVEAFT FAIPAARVPS PACWCSKSDS
1001: PIFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM TKMLDILEAF ISLYGYTYMR LDGSTPPEER
1101: QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS ESTIEENILK KANQKRALDN LVIQNGEYNT
1201: EFFKKLDPME LFSGHKTLTR KDEEEKSKNC EAELSLSNAD VEAALKHAED EADYMALKRV EEEEAVENQE FTEEPIERPE DDELVNEDDI KSDEPADQGV
1301: AAAGSAKEEV SLVPIDNRDE RDDIITLSQE EDNDVPDDVK QMAAAAAAAG QAISSFENQL RPIDRYAIRF LEVWDPIIVE AAIENEAGFE EKEWELDHIE
1401: KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLTQ HQLMEDLENE AREREAAEEA ERRLALNESA HVLKPKKKKK VKKAKYKSLK KGSLGSESKQ
1501: AKTVVKVEAS SDEDNEECGY VSSSDSDMVS PRLQKRMKGK KRELVFDSDE EKNSKKKAKK HKKSLSHSDI KCKTPHDELV PSKPSDSMAV DNELKPANRG
1601: KTLGKKFIIS MPIKRVLMIK PEKLKKGNLW SRDCVPSPDS WLPQEDAVLC AMVHEYGSNW SLVSETLYGM TAGGAYRGRH RHPAYCCERY RELMQRHVLS
1701: ASDSVVNEKN LNAGSGKALL KVTEENMRAL LNIAAEQPDT EMLLQKHFTC LLSSIWRTST RSTNNQKLSL NSPIFNRQVM GSANHAQELA RKPFQGMKIT
1801: SLSSKSVESA LQDSSTSQPV DTASRSRLQE DQPINKVGLD LTLEFPRGND DSSTHFPPII KLTIDGSDSF NYVNDPPGED KLKVSRIAAE DRYRNAANAC
1901: IEDSFGWASN TFPAYDPKSR SGVKAPSLGK HKLSASDTPK SSKSKQRKLS AAEQSEVAWV RRNDPNLKFD FTPADREEEE EDKEVSEEIE MIGCPHWYDP
2001: LLTSGLDDCS LASEPSGIE

Best Arabidopsis Sequence Match ( AT3G12810.1 )
(BLAST)

0001: MASKGGKSKP DIVMASKSGK SKPDNESRAK RQKTLEAPKE PRRPKTHWDH VLEEMAWLSK DFESERKWKL AQAKKVALRA SKGMLDQASR EERKLKEEEQ
0101: RLRKVALNIS KDMKKFWMKV EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI ESKSDEERAE QIPPEINSSA
0201: GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL
0301: ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN
0401: EDHVEEIALL QKESEMPIEV LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS ENVEGTFHEV AEDNDKDSSD
0501: KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW
0601: ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL
0701: MELWSLMHFL MPHVFQSHQE FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS KRQRNLYEDF IASTETQATL
0801: TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK
0901: DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ
1001: KMIELVEAFT FAIPAARVPS PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL AMLLRKLKFG GHRALIFTQM
1101: TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS
1201: ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE
1301: FTEEPVERPE DDELVNEDDI KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG QAISSFENQL RPIDRYAIRF
1401: LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA
1501: HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI
1601: KYKQTSALLD ELEPSKPSDS MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA ILCAMVHEYG PNWNFVSGTL
1701: YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM
1801: LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS
1901: DSLNYVNEPP GEDVLKGSRV AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR KLLAEQLEGA WVRPNDPNLK
2001: FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS GLDDCSLASD ISEIE

Arabidopsis Description

PIE1Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9V2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.