Factsheet for Bra012099.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53848	Canola	cytosol	99.09	99.09
AT5G66750.1	Thale cress	cytosol	86.12	86.91
VIT_04s0023g01610.t01	Wine grape	cytosol	72.63	73.78
PGSC0003DMT400040011	Potato	cytosol	71.21	72.81
PGSC0003DMT400038561	Potato	cytosol	69.78	70.79
KRH76800	Soybean	cytosol	69.78	70.6
KRH28662	Soybean	cytosol	69.39	70.12
Solyc02g062780.2.1	Tomato	cytosol	69.65	69.65
GSMUA_Achr3P26090_001	Banana	cytosol	65.89	66.93
Solyc02g085390.2.1	Tomato	cytosol	70.04	66.58
TraesCS7A01G074600.1	Wheat	cytosol	61.87	63.52
TraesCS7D01G069700.1	Wheat	cytosol	63.16	62.52
EER97913	Sorghum	cytosol	62.65	62.08
Zm00001d007978_P003	Maize	cytosol	62.78	61.42
TraesCS2A01G368200.1	Wheat	cytosol	61.35	60.72
TraesCS4D01G053600.2	Wheat	cytosol	64.72	59.76
TraesCS4A01G261000.1	Wheat	cytosol	64.46	59.31
EER93549	Sorghum	cytosol	63.03	58.13
Os09t0442700-01	Rice	cytosol	63.68	58.11
TraesCS2D01G365000.1	Wheat	cytosol	61.87	58.1
TraesCS2B01G385300.1	Wheat	cytosol	61.61	58.0
Os03t0722400-01	Rice	cytosol	63.68	57.83
Zm00001d033827_P006	Maize	cytosol	62.65	56.96
TraesCS4A01G372200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	63.68	56.31
Bra037150.1-P	Field mustard	nucleus	87.16	56.05
TraesCS4B01G053600.1	Wheat	cytosol, plastid	64.46	54.86
Bra040221.1-P	Field mustard	nucleus	35.93	26.41
Bra017422.1-P	Field mustard	cytosol	25.94	26.25
Bra020751.1-P	Field mustard	nucleus	34.89	25.55
Bra002173.1-P	Field mustard	nucleus	34.76	25.19
Bra023689.1-P	Field mustard	nucleus	34.63	24.25
Bra040237.1-P	Field mustard	nucleus	33.59	23.55
Bra004881.1-P	Field mustard	nucleus	15.82	18.86
Bra011311.1-P	Field mustard	nucleus	27.63	17.55
Bra007814.1-P	Field mustard	nucleus	28.53	16.12
Bra014632.1-P	Field mustard	cytosol	30.09	15.32
Bra037208.1-P	Field mustard	nucleus	31.78	14.53
Bra007318.1-P	Field mustard	nucleus	27.5	14.17
Bra034727.1-P	Field mustard	nucleus	31.91	12.18
Bra039296.1-P	Field mustard	plastid	29.83	10.76
Bra000409.1-P	Field mustard	plastid	29.83	10.64
Bra027574.1-P	Field mustard	nucleus	28.53	9.9
Bra000114.1-P	Field mustard	nucleus	32.43	7.63

Protein Annotations

MapMan:12.5.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra012099	EnsemblPlants:Bra012099.1	EnsemblPlants:Bra012099.1-P
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M4D6J0	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF812
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI00025417CC
SEG:seg	:	:	:	:	:

Description

AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase

Coordinates

chrA07:-:10035165..10038867

Molecular Weight (calculated)

87381.6 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.570

Length

771 amino acids

Sequence
(BLAST)

001: MVSLRSTENT PASEMASDGK TEKDGSGDSP TSVLSDEENC EEKTAAVAVE EDILLAKNGD SSLISEAMAQ EEEQLLKIRE DEEIAKRAAG SGEAPDLNDT
101: QFTKLDELLT QTQLYSEFLL EKMEDITKNG IEGETQKAEP EPEPEKKGRG RKRKAATQGD SMKAKKAVAA MISRSKEGRE SAESDLTEEE RVMKEQGELV
201: PLLTGGKLKS YQLKGVKWLI SLWQNGLNGI LADQMGLGKT IQTIGFLSHL KGNGLDGPYL VIAPLSTLSN WMNEISRFTP SINAIIYHGD KKERDELRKK
301: HMPRTVGPKF PIVITSYEVA MNDAKKNLRH YPWKYVVIDE GHRLKNHKCK LLRELRYLNM ENKLLLTGTP LQNNLSELWS LLNFILPDIF ASHDEFESWF
401: DFSGKNNNEA TKEEGEEKRR AQVVAKLHNI LRPFILRRMK CDVELSLPRK KEIIIYATMT DHQKKFQEHL VNRTLETHIR DDTIRGHGLK GKLNNLAIQL
501: RKNCNHPDLL VGQLDGSYLY PPLEDIVGQC GKFRLLERLL VRLFAKNHRV LIFSQWTKIL DIMDYYFSEK GFEVCRIDGS VKLEERRRQI QEFNDEKSNC
601: RIFLLSTRAG GLGINLTAAD TCILYDSDWN PQMDLQAMDR CHRIGQTKPV HVYRLATARS IEGRVLKRAY SKLKLEHVVI GKGQFHQERA KSSTPLEEDD
701: ILALLKDDEN AEDKLIQTDI SEEDLDRVLD RSDLMITLPG ETQAQEAFPV KGPGWEVVSS SAGGMLSSLN S

Best Arabidopsis Sequence Match ( AT5G66750.1 )
(BLAST)

001: MVSLRSRKVI PASEMVSDGK TEKDASGDSP TSVLNEEENC EEKSVTVVEE EILLAKNGDS SLISEAMAQE EEQLLKLRED EEKANNAGSA VAPNLNETQF
101: TKLDELLTQT QLYSEFLLEK MEDITINGIE SESQKAEPEK TGRGRKRKAA SQYNNTKAKR AVAAMISRSK EDGETINSDL TEEETVIKLQ NELCPLLTGG
201: QLKSYQLKGV KWLISLWQNG LNGILADQMG LGKTIQTIGF LSHLKGNGLD GPYLVIAPLS TLSNWFNEIA RFTPSINAII YHGDKNQRDE LRRKHMPKTV
301: GPKFPIVITS YEVAMNDAKR ILRHYPWKYV VIDEGHRLKN HKCKLLRELK HLKMDNKLLL TGTPLQNNLS ELWSLLNFIL PDIFTSHDEF ESWFDFSEKN
401: KNEATKEEEE KRRAQVVSKL HGILRPFILR RMKCDVELSL PRKKEIIMYA TMTDHQKKFQ EHLVNNTLEA HLGENAIRGQ GWKGKLNNLV IQLRKNCNHP
501: DLLQGQIDGS YLYPPVEEIV GQCGKFRLLE RLLVRLFANN HKVLIFSQWT KLLDIMDYYF SEKGFEVCRI DGSVKLDERR RQIKDFSDEK SSCSIFLLST
601: RAGGLGINLT AADTCILYDS DWNPQMDLQA MDRCHRIGQT KPVHVYRLST AQSIETRVLK RAYSKLKLEH VVIGQGQFHQ ERAKSSTPLE EEDILALLKE
701: DETAEDKLIQ TDISDADLDR LLDRSDLTIT APGETQAAEA FPVKGPGWEV VLPSSGGMLS SLNS

Arabidopsis Description

DDM1ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.