Factsheet for Bra017422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002801.1-P
Bra006864.1-P
Bra033014.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	Bra002801.1-P	AT5G56630.1	21798944
AT2G02090.1	Bra006864.1-P	AT5G56630.1	21798944
AT2G02090.1	Bra033014.1-P	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04120	Canola	cytosol	98.56	98.82
CDY48619	Canola	nucleus, plastid	98.56	98.17
AT2G02090.1	Thale cress	cytosol, plastid	90.42	90.3
VIT_01s0010g02080.t01	Wine grape	cytosol	73.62	77.06
KRH49484	Soybean	nucleus	72.57	73.34
KRG89166	Soybean	nucleus	72.31	73.27
Solyc02g014770.2.1	Tomato	nucleus	69.03	71.27
Zm00001d015595_P001	Maize	cytosol	16.4	63.45
GSMUA_Achr4P25930_001	Banana	cytosol	66.4	62.7
Os04t0566100-00	Rice	cytosol	67.32	59.44
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	65.09	57.08
TraesCS2D01G400400.1	Wheat	cytosol	65.62	56.88
TraesCS2B01G421200.3	Wheat	cytosol	65.22	55.78
KXG26914	Sorghum	nucleus	66.93	52.52
Zm00001d002656_P002	Maize	nucleus	66.27	51.58
Bra012099.1-P	Field mustard	cytosol	26.25	25.94
Bra040237.1-P	Field mustard	nucleus	27.82	19.27
Bra040221.1-P	Field mustard	nucleus	26.12	18.97
Bra020751.1-P	Field mustard	nucleus	25.98	18.8
Bra002173.1-P	Field mustard	nucleus	25.98	18.61
Bra023689.1-P	Field mustard	nucleus	25.46	17.62
Bra037150.1-P	Field mustard	nucleus	25.85	16.43
Bra011311.1-P	Field mustard	nucleus	25.2	15.82
Bra004881.1-P	Field mustard	nucleus	13.25	15.61
Bra007814.1-P	Field mustard	nucleus	25.33	14.14
Bra014632.1-P	Field mustard	cytosol	28.08	14.13
Bra007318.1-P	Field mustard	nucleus	25.98	13.24
Bra037208.1-P	Field mustard	nucleus	26.25	11.86
Bra034727.1-P	Field mustard	nucleus	29.53	11.14
Bra000409.1-P	Field mustard	plastid	25.07	8.83
Bra027574.1-P	Field mustard	nucleus	25.33	8.69
Bra039296.1-P	Field mustard	plastid	24.28	8.66
Bra000114.1-P	Field mustard	nucleus	26.64	6.2
PGSC0003DMT400011842	Potato	nucleus	3.28	3.62
Os02t0114033-00	Rice	nucleus	1.97	1.73
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra017422	EnsemblPlants:Bra017422.1	EnsemblPlants:Bra017422.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0006974
GO:GO:0008150	GO:GO:0009628	GO:GO:0009987	GO:GO:0071494	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M4DLP1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF845	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI00025422C9	SEG:seg

Description

AT2G02090 (E=0.0) CHR19, CHA19, ETL1 | ETL1; ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA09:-:15160432..15164034

Molecular Weight (calculated)

86360.9 Da

IEP (calculated)

5.449

GRAVY (calculated)

-0.458

Length

762 amino acids

Sequence
(BLAST)

001: MKRDFDEISE EEWQQHSFNP SRVLKQPRAP KTTTTTRTPP PPRQQPNPSP PIESFAYRRP SKAIESDDDF VVVEDSGESD SDVKIVNGGD DLLLDDEEEE
101: AKVVVVRRAR VGRRFVIEDE EGSEEDEVEV EEVSSSEGEG EDGGGGDGDE DVVGKALQKC AKISADLRKE LYGSSSGVTT CDRYSEVESS TVRIVTQTDI
201: DEACKAEDSD FQPILKPYQL VGVNFLLLLY KKGIEGAILA DEMGLGKTIQ AITYLTLLNH LNNDPGPHLV VCPASVLENW ERELRKWCPS FTVLQYHGAA
301: RAAYSRELNS LSKAGKPPPF NVLLVCYSLF ERHSEQQKDD RKVLKRWRWS CVLMDEAHAL KDKNSYRWKN LMSVARNANQ RLMLTGTPLQ NDLHELWSLL
401: EFMLPDIFTT ENVDLKKLLN AEDTELITRM KSILGPFILR RLKSDVMQQL VPKIQRVEYV HMEKKQEDTY KEAIEDYRAA SQARVLKLSS KSLAKALPKR
501: QISNYFTQFR KIANHPLLIR RIYSDEDVIR IARKLHPIGA FGFECSLERV IEEVKSYNDF RIHQLLLQYG VNNTKGTLSD KHVMLSAKCR TLAELLPSMK
601: KSGNRVLIFS QWTSMLDILE WTLDVIGVTY RRLDGSTQVT DRQTIVDTFN NDKSIFACLL STRAGGQGLN LTGADTVIIH DMDFNPQIDR QAEDRCHRIG
701: QTKPVTIFRL VTKSTVDENI YEIAKRKLVL DAAVLESGVH VDDNGDTPEK TMGEILASLL MA

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.