Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400044886 | |
| PGSC0003DMT400070848 | |
| PGSC0003DMT400095815 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02090.1 | PGSC0003DMT400044886 | AT5G56630.1 | 21798944 |
| AT2G02090.1 | PGSC0003DMT400070848 | AT5G56630.1 | 21798944 |
| AT2G02090.1 | PGSC0003DMT400095815 | AT5G56630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400000170 | Potato | nucleus | 2.46 | 11.64 |
| PGSC0003DMT400079102 | Potato | nucleus | 15.77 | 10.3 |
| PGSC0003DMT400058376 | Potato | nucleus | 15.34 | 9.96 |
| Os02t0114000-01 | Rice | cytosol, nucleus | 4.92 | 5.83 |
| PGSC0003DMT400038561 | Potato | cytosol | 6.22 | 5.66 |
| PGSC0003DMT400040011 | Potato | cytosol | 5.79 | 5.31 |
| KRG89166 | Soybean | nucleus | 3.76 | 3.46 |
| KRH49484 | Soybean | nucleus | 3.76 | 3.45 |
| VIT_01s0010g02080.t01 | Wine grape | cytosol | 3.62 | 3.43 |
| CDY04120 | Canola | cytosol | 3.62 | 3.29 |
| Bra017422.1-P | Field mustard | cytosol | 3.62 | 3.28 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 3.62 | 3.28 |
| CDY48619 | Canola | nucleus, plastid | 3.62 | 3.27 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 3.76 | 3.22 |
| Solyc02g014770.2.1 | Tomato | nucleus | 3.33 | 3.12 |
| TraesCS2A01G403300.2 | Wheat | cytosol, nucleus | 3.62 | 2.88 |
| TraesCS2D01G400400.1 | Wheat | cytosol | 3.62 | 2.84 |
| TraesCS2B01G421200.3 | Wheat | cytosol | 3.62 | 2.81 |
| KXG26914 | Sorghum | nucleus | 3.76 | 2.68 |
| Os02t0114033-00 | Rice | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400066819 | Potato | cytosol | 0.0 | 0.0 |
| Zm00001d015595_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011842 | EnsemblPlantsGene:PGSC0003DMG400004650 | Gene3D:1.10.10.60 | Gene3D:3.40.50.300 | InterPro:DUF4208 | InterPro:P-loop_NTPase |
| ncoils:Coil | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF952 | PFAM:PF13907 | PGSC:PGSC0003DMG400004650 | SEG:seg |
| SMART:SM01176 | SUPFAM:SSF52540 | UniParc:UPI000295F984 | UniProt:M1A0A0 | MapMan:35.1 | : |
Description
Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400004650]
Coordinates
chr12:+:60470771..60479293
Molecular Weight (calculated)
77715.6 Da
IEP (calculated)
9.968
GRAVY (calculated)
-0.732
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRAHRIGQQ EVVNIYRFVT SKSVEEDILE RAKKKMVLDH LVIQKLNAEG KLEKKETKKG SLFDKNELSA ILRFGAEELF KEDKNDEESK KRLLSLDIDE
101: ILERAEKVEE KGAEAEEGKE LLSAFKVANF CGAEDDATFW SRWIKPEATA HAEDALAPRA ARNKKSYAEA SPLVVTNKRK KGVDAQERFP KRRKGDFSCT
201: LPAIDGASAQ VRGWSFGNLS KRDATRFSRE VKKFGNDSQI DLISSEVGGA VEAAPTEAQV ELFDSLIDGC REAVKGEVVD PKGPLLDFFG VPVKADELLG
301: RVEELQLLAK RISRYADPVS QFRALAYLKP ATWSKGCGWN QKDDARLLLG IHYHGFGNWE KIRLDEKLGL MKKIAPVELQ HHETFLPRAP QLKERASQLL
401: QMEVAAVGGK NTSLKVGRKT SNKQKESLPS TTAPLGKGKQ SKLSSSGNAK MGRGRAAKGQ KKVEPLVKEE GEMSDNEEVY EQFKEVKWME WCEDVMVYEE
501: KTLKRLQRLQ TTSADLPKDK VLAKIRNYLQ LLGRRIDQIV FEYENESHKQ ERMTVRLWNY VSTFSNLSGE KLRQIYSKLK QEQHVEGRVG PSQFNGSAPA
601: HPTPGFIPRG FDAAKFEAWK RRKRAEADVH SQVQPQHQRA LPNGTRLPEP NLSSGILGAA PLDSKQSGNG RPYRTHQSGL PQRPSFSSGP R
101: ILERAEKVEE KGAEAEEGKE LLSAFKVANF CGAEDDATFW SRWIKPEATA HAEDALAPRA ARNKKSYAEA SPLVVTNKRK KGVDAQERFP KRRKGDFSCT
201: LPAIDGASAQ VRGWSFGNLS KRDATRFSRE VKKFGNDSQI DLISSEVGGA VEAAPTEAQV ELFDSLIDGC REAVKGEVVD PKGPLLDFFG VPVKADELLG
301: RVEELQLLAK RISRYADPVS QFRALAYLKP ATWSKGCGWN QKDDARLLLG IHYHGFGNWE KIRLDEKLGL MKKIAPVELQ HHETFLPRAP QLKERASQLL
401: QMEVAAVGGK NTSLKVGRKT SNKQKESLPS TTAPLGKGKQ SKLSSSGNAK MGRGRAAKGQ KKVEPLVKEE GEMSDNEEVY EQFKEVKWME WCEDVMVYEE
501: KTLKRLQRLQ TTSADLPKDK VLAKIRNYLQ LLGRRIDQIV FEYENESHKQ ERMTVRLWNY VSTFSNLSGE KLRQIYSKLK QEQHVEGRVG PSQFNGSAPA
601: HPTPGFIPRG FDAAKFEAWK RRKRAEADVH SQVQPQHQRA LPNGTRLPEP NLSSGILGAA PLDSKQSGNG RPYRTHQSGL PQRPSFSSGP R
0001: MAFFRNYSND TVSHNVLDEN EERQNAATFQ SSPLNEDVDG TYSERGFDMN MDVQYQSDPE PGCSIRQPNE TAVDNVADPV DSHYQSSTKR LGVTGRWGST
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
0101: FWKDCQPMGQ REGSDPAKDS QSGYKEAYHS EDNHSNDRSE KLDSENENDN ENEEEDNEMN KHQSGQADVP ADEMLSDEYY EQDEDNQSDH VHYKGYSNPT
0201: NSRSLPKAGS AVHSNSRTSR AIHKNIHYSD SNHDHNGDAD MDYEEEEDED DPEDADFEPY DAADDGGASK KHGQGWDVSD EDPESDEEID LSDYEDDYGT
0301: KKPKVRQQSK GFRKSSAGLE RKSFHVSSRQ KRKTSYQDDD SEEDSENDND EGFRSLARRG TTLRQNNGRS TNTIGQSSEV RSSTRSVRKV SYVESEDSED
0401: IDDGKNRKNQ KDDIEEEDAD VIEKVLWHQL KGMGEDVQTN NKSTVPVLVS QLFDTEPDWN EMEFLIKWKG QSHLHCQWKT LSDLQNLSGF KKVLNYTKKV
0501: TEEIRYRTAL SREEIEVNDV SKEMDLDIIK QNSQVERIIA DRISKDGLGD VVPEYLVKWQ GLSYAEATWE KDVDIAFAQV AIDEYKAREV SIAVQGKMVE
0601: QQRTKGKASL RKLDEQPEWL IGGTLRDYQL EGLNFLVNSW LNDTNVILAD EMGLGKTVQS VSMLGFLQNT QQIPGPFLVV VPLSTLANWA KEFRKWLPGM
0701: NIIVYVGTRA SREVCQQYEF YNEKKVGRPI KFNALLTTYE VVLKDKAVLS KIKWIYLMVD EAHRLKNSEA QLYTALLEFS TKNKLLITGT PLQNSVEELW
0801: ALLHFLDPGK FKNKDEFVEN YKNLSSFNES ELANLHLELR PHILRRVIKD VEKSLPPKIE RILRVEMSPL QKQYYKWILE RNFHDLNKGV RGNQVSLLNI
0901: VVELKKCCNH PFLFESADHG YGGDINDNSK LDKIILSSGK LVILDKLLVR LRETKHRVLI FSQMVRMLDI LAEYLSLRGF QFQRLDGSTK AELRQQAMDH
1001: FNAPASDDFC FLLSTRAGGL GINLATADTV VIFDSDWNPQ NDLQAMSRAH RIGQQEVVNI YRFVTSKSVE EEILERAKRK MVLDHLVIQK LNAEGRLEKR
1101: ETKKGSNFDK NELSAILRFG AEELFKEDKN DEESKKRLLS MDIDEILERA EQVEEKHTDE TEHELLGAFK VANFCNAEDD GSFWSRWIKP DSVVTAEEAL
1201: APRAARNTKS YVDPSHPDRT SKRKKKGSEP PEHTERSQKR RKTEYFVPST PLLEGTSAQV RGWSYGNLPK RDAQRFYRTV MKFGNHNQMA CIAEEVGGVV
1301: EAAPEEAQVE LFDALIDGCK ESVETGNFEP KGPVLDFFGV PVKANELLKR VQGLQLLSKR ISRYNDPISQ FRVLSYLKPS NWSKGCGWNQ IDDARLLLGI
1401: LYHGFGNWEK IRLDESLGLT KKIAPVELQH HETFLPRAPN LKERATALLE MELAAAGGKN TNAKASRKNS KKVKDNLINQ FKAPARDRRG KSGPANVSLL
1501: STKDGPRKTQ KAEPLVKEEG EMSDDGEVYE QFKEQKWMEW CEDVLADEIK TLGRLQRLQT TSADLPKEKV LFKIRRYLEI LGRRIDAIVL EHEEDLYKQD
1601: RMTMRLWNYV STFSNLSGDR LNQIYSKLKQ EKEEEEGVGP SHLNGSRNFQ RQQKFKTAGN SQGSQQVHKG IDTAKFEAWK RRRRTENDVQ TERPTITNSN
1701: SLGILGPGPL DRSHRARQTG FPPR
Arabidopsis Description
CHR5Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.