Factsheet for TraesCS2D01G400400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G344000.1
TraesCS1B01G357000.1
TraesCS1D01G346200.1
TraesCS3A01G277700.1
TraesCS3B01G311900.2
TraesCS3D01G278000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	TraesCS1A01G344000.1	AT5G56630.1	21798944
AT2G02090.1	TraesCS1B01G357000.1	AT5G56630.1	21798944
AT2G02090.1	TraesCS1D01G346200.1	AT5G56630.1	21798944
AT2G02090.1	TraesCS3A01G277700.1	AT5G56630.1	21798944
AT2G02090.1	TraesCS3B01G311900.2	AT5G56630.1	21798944
AT2G02090.1	TraesCS3D01G278000.1	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	96.93	98.04
TraesCS2B01G421200.3	Wheat	cytosol	98.18	96.86
Os04t0566100-00	Rice	cytosol	80.2	81.69
KXG26914	Sorghum	nucleus	77.59	70.24
Zm00001d002656_P002	Maize	nucleus	77.25	69.36
VIT_01s0010g02080.t01	Wine grape	cytosol	56.66	68.41
GSMUA_Achr4P25930_001	Banana	cytosol	62.23	67.78
KRG89166	Soybean	nucleus	57.0	66.62
KRH49484	Soybean	nucleus	56.54	65.92
AT2G02090.1	Thale cress	cytosol, plastid	57.11	65.79
Bra017422.1-P	Field mustard	cytosol	56.88	65.62
CDY04120	Canola	cytosol	56.54	65.39
CDY48619	Canola	nucleus, plastid	56.66	65.1
Solyc02g014770.2.1	Tomato	nucleus	54.27	64.63
TraesCS7D01G069700.1	Wheat	cytosol	22.64	25.55
TraesCS2D01G365000.1	Wheat	cytosol	23.55	25.21
TraesCS4D01G053600.2	Wheat	cytosol	23.89	25.15
TraesCS1D01G089200.2	Wheat	nucleus	24.69	19.09
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	18.77	18.71
TraesCS1D01G099600.1	Wheat	nucleus	22.53	17.89
TraesCS3D01G068900.1	Wheat	nucleus	22.41	17.57
TraesCS3D01G403600.1	Wheat	nucleus	21.96	15.72
TraesCS4D01G159900.1	Wheat	nucleus	25.14	14.79
TraesCS7D01G148900.4	Wheat	nucleus	20.93	13.1
TraesCS2D01G130900.1	Wheat	nucleus	21.84	11.11
TraesCS7D01G531100.1	Wheat	nucleus	25.6	10.36
TraesCS6D01G039800.1	Wheat	nucleus, plastid	22.53	8.95
TraesCS2D01G234200.1	Wheat	nucleus	22.87	8.95
TraesCS7D01G206700.2	Wheat	nucleus	24.23	6.33
PGSC0003DMT400011842	Potato	nucleus	2.84	3.62

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF845	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
EnsemblPlantsGene:TraesCS2D01G400400	EnsemblPlants:TraesCS2D01G400400.1	TIGR:cd00046	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:514341460..514348260

Molecular Weight (calculated)

98189.6 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.491

Length

879 amino acids

Sequence
(BLAST)

001: MRRDFEEISD DEWSNHTFKP SRALKRPHRS PQPPARPPPP IDSFRYDPKA SSAVGTSNGA AVVLSDDDDF DLGKSAKARR AENSSRVLKR PQHKSPPRRA
101: TPSTQSSRHN PKPSKAASIA ALSDDDFVPE DEFDPEDDDF DLPASRRSRP RPSTGRRLAT AIDLSEEEED LDLTFEDSDI ADDDSDLADD DSDHPAPRSS
201: RPRRTTGRRF VIEDDDDSDG SVAAAVVEVG DEEEDDGVNW SELENEDDED GDYNGQSSVK AEEVEGDVVG KALRRCSRIS VDLRQELYGS SARNCESYAE
301: TDASTVRIVT QEDVDAACTS EDMDFNPVLK PYQLVGVNFL LLLHQKGIGG AILADEMGLG KTVQAVTYLN LLQHLYDDPG PHLIVCPASV LENWERELKK
401: WCPSFSIIMF HGAGRTAFSK ELSSLGKAGC PAPFNVLLVG YSLFERRSAQ QKDDRKALKR WKWSCVLMDE AHVLKDKGSF RWKNLMAVAQ HARQRLMLTG
501: TPLQNDLHEL WSLLEFMMPD IFATGEVDLK KLLNSEDHEL ISRIKSILGP FILRRLKSDV MQQLVPKTQH VNFVSMGSEQ LKAYNGAANE YRAICEARTA
601: KSSGQYPQNL VGLIPKRQIS NYFMQLRKIA NHPLLIRRIY SDKDVDRIAR LTYPKGAFGF ECSLDRAIQA LKNYNDFAIH QLLITHGDAG TKGALKDEHV
701: FASAKCQALA ELLPSLANDG HRVLIFSQWT TMLDILEWAL EVIGITYRRL DGGTPVIERQ TIVDTFNNDL SINACLLSTR AGGQGLNLIG ADTVIIHDMD
801: FNPQMDRQAE DRCHRIGQQK PVTIYRLVTK ESVDESIYAI ARRKLVLDAA VLQSGADLDD RTDVPEQTMG EILASLLLV

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.