Factsheet for GSMUA_Achr4P25930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P04940_001
GSMUA_Achr2P16600_001
GSMUA_Achr4P01040_001
GSMUA_Achr4P08240_001
GSMUA_Achr4P15420_001
GSMUA_Achr7P10770_001
GSMUA_Achr7P13640_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	GSMUA_Achr1P04940_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr2P16600_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr4P01040_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr4P08240_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr4P15420_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr7P10770_001	AT5G56630.1	21798944
AT2G02090.1	GSMUA_Achr7P13640_001	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02080.t01	Wine grape	cytosol	65.68	72.8
KRH49484	Soybean	nucleus	63.57	68.04
KRG89166	Soybean	nucleus	63.32	67.95
Solyc02g014770.2.1	Tomato	nucleus	61.96	67.75
Bra017422.1-P	Field mustard	cytosol	62.7	66.4
AT2G02090.1	Thale cress	cytosol, plastid	62.58	66.19
CDY04120	Canola	cytosol	62.21	66.05
CDY48619	Canola	nucleus, plastid	62.58	66.01
Os04t0566100-00	Rice	cytosol	69.39	64.89
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	67.16	62.37
TraesCS2D01G400400.1	Wheat	cytosol	67.78	62.23
TraesCS2B01G421200.3	Wheat	cytosol	67.41	61.05
KXG26914	Sorghum	nucleus	68.03	56.54
Zm00001d002656_P002	Maize	nucleus	67.91	55.98
GSMUA_AchrUn_...	Banana	cytosol	17.84	29.69
GSMUA_Achr3P26090_001	Banana	cytosol	23.79	25.3
GSMUA_Achr3P23910_001	Banana	nucleus	24.54	18.52
GSMUA_Achr8P09960_001	Banana	nucleus	24.66	18.41
GSMUA_Achr6P20210_001	Banana	nucleus	26.02	14.32
GSMUA_Achr8P00120_001	Banana	nucleus	25.77	14.23
GSMUA_Achr4P21270_001	Banana	cytosol	24.16	14.14
GSMUA_Achr6P02430_001	Banana	cytosol	14.87	13.29
GSMUA_Achr8P06840_001	Banana	nucleus	22.43	13.12
GSMUA_Achr8P29610_001	Banana	nucleus	24.16	11.61
GSMUA_Achr1P24350_001	Banana	nucleus	23.54	8.91
GSMUA_AchrUn_...	Banana	nucleus	23.42	8.81
GSMUA_Achr3P26510_001	Banana	nucleus	17.47	8.67
GSMUA_AchrUn_...	Banana	nucleus, plastid	23.67	8.57
GSMUA_AchrUn_...	Banana	cytosol, nucleus	3.35	8.13
GSMUA_Achr9P11210_001	Banana	nucleus	20.69	8.11
GSMUA_Achr6P29570_001	Banana	nucleus	20.69	7.8
PGSC0003DMT400011842	Potato	nucleus	3.22	3.76

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0009628
GO:GO:0009987	GO:GO:0071494	EnsemblPlantsGene:GSMUA_Achr4G25930_001	EnsemblPlants:GSMUA_Achr4P25930_001	EnsemblPlants:GSMUA_Achr4T25930_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M0SS54	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF845
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI000295FFB7
SEG:seg	:	:	:	:	:

Description

SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25930_001]

Coordinates

chr4:-:25242118..25252341

Molecular Weight (calculated)

90995.5 Da

IEP (calculated)

4.952

GRAVY (calculated)

-0.263

Length

807 amino acids

Sequence
(BLAST)

001: MKRAFDEISD DEWERHTFRP SRVLKRTKTP SPPPIESFAY RPKALGGYSS SNATGSFESP VNLDDDDEEE NAELKVVRPP QGGGRGRRFV VDEDSEAGNA
101: VEVLEVRSTT VDDEEISWTD EDDVEALSEE AVVTAEEEEV EEVDVVGKAL QKCAKISLAL RRELYGSSVS NCDRYAEVEA FSSRIVTQED IDAVFFDEES
201: DFEPILKPYQ LVGVNFLLLL YRKNIGGVVA YLVWSEVFGE LEHQQQKGLS ASSNSFLFPL SSTILLYEGS HVPRPFSCAA ILADEMGLGK TVQAVTYLNL
301: LKHLDRDPGP HLIVCPASVL ENWERELKRW CPSFSVILFH GSGRTTYSKE LSSFGKAGLP PPFNVLLACY SLFERHSAQQ KDDRRILKRW QWSCVLMDEA
401: HVLKDRNSYR WKNLMSIAQS ARQRLMLTGT PLQNDLHELW SLLEFMMPDI FATGDVDLKK LLNAEDSDLI PRIKSILGPF ILRRLKSDVM QQLVPKIQHV
501: QYVYMGSEQS MAYAKAINEY RAASEARVLK STTCKSGGVG GLLPKRQISN YFMQFRKIAN HPLLVRQIYS DEDVVCVAKV LYPKGVFGFE CSIQRAIQEI
601: KSYNDFEIHR LLISYGNNGT KGALTDEHVL ASAKCQALAE LLPLLKKDGH RVLIFSQWTT MLDILEWTLE VIGVTYRRLD GSTQVLERQT IVDTFNNDPS
701: IFACLLSTRA GGQGLNLIGA DTVIIHDMDF NPQMDRQAED RCHRIGQDKP VTIYRFVTKD TVDENIYGIA RRKLVLDAAV LESGAELDNE NDVPEKTMGE
801: ILSALLL

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.