CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88580
CDX93710
CDX99958
CDY03977
CDY07887
CDY11911
CDY20715
CDY32769
CDY32873
CDY41800
CDY65216
CDY68743
CDY72240

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	CDX88580	AT5G56630.1	21798944
AT2G02090.1	CDX93710	AT5G56630.1	21798944
AT2G02090.1	CDX99958	AT5G56630.1	21798944
AT2G02090.1	CDY03977	AT5G56630.1	21798944
AT2G02090.1	CDY07887	AT5G56630.1	21798944
AT2G02090.1	CDY11911	AT5G56630.1	21798944
AT2G02090.1	CDY20715	AT5G56630.1	21798944
AT2G02090.1	CDY32769	AT5G56630.1	21798944
AT2G02090.1	CDY32873	AT5G56630.1	21798944
AT2G02090.1	CDY41800	AT5G56630.1	21798944
AT2G02090.1	CDY65216	AT5G56630.1	21798944
AT2G02090.1	CDY68743	AT5G56630.1	21798944
AT2G02090.1	CDY72240	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017422.1-P	Field mustard	cytosol	98.17	98.56
CDY04120	Canola	cytosol	97.52	98.16
AT2G02090.1	Thale cress	cytosol, plastid	90.07	90.3
VIT_01s0010g02080.t01	Wine grape	cytosol	72.94	76.65
KRH49484	Soybean	nucleus	72.42	73.47
KRG89166	Soybean	nucleus	72.16	73.4
Solyc02g014770.2.1	Tomato	nucleus	68.37	70.87
Zm00001d015595_P001	Maize	cytosol	16.34	63.45
GSMUA_Achr4P25930_001	Banana	cytosol	66.01	62.58
Os04t0566100-00	Rice	cytosol	66.8	59.21
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	64.58	56.85
TraesCS2D01G400400.1	Wheat	cytosol	65.1	56.66
TraesCS2B01G421200.3	Wheat	cytosol	64.71	55.56
KXG26914	Sorghum	nucleus	66.54	52.42
Zm00001d002656_P002	Maize	nucleus	65.75	51.38
CDY47176	Canola	cytosol	22.75	36.71
CDX81370	Canola	cytosol	26.14	26.11
CDY53848	Canola	cytosol	26.27	26.07
CDY57125	Canola	cytosol	26.01	25.98
CDY30755	Canola	cytosol	26.27	25.97
CDX92595	Canola	nucleus	25.88	22.15
CDY18840	Canola	nucleus	27.71	19.58
CDX74702	Canola	cytosol	22.09	19.43
CDY18960	Canola	cytosol	21.96	19.33
CDY18857	Canola	nucleus	26.14	19.07
CDY24695	Canola	nucleus	26.14	18.99
CDY13907	Canola	nucleus	25.49	18.41
CDY02609	Canola	nucleus	24.97	18.1
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.14	17.65
CDX75208	Canola	cytosol	25.23	16.14
CDX68802	Canola	cytosol	25.23	15.9
CDY30994	Canola	nucleus	12.81	15.31
CDY56279	Canola	cytosol	25.49	14.52
CDX76767	Canola	cytosol, nucleus, plastid	25.75	14.32
CDX72050	Canola	cytosol	25.88	13.44
CDY67658	Canola	cytosol, nucleus	19.35	13.11
CDX88940	Canola	nucleus	28.24	13.06
CDX81444	Canola	nucleus	26.41	11.93
CDY37209	Canola	nucleus	26.27	11.92
CDY68094	Canola	nucleus	19.35	11.87
CDY08401	Canola	nucleus	29.54	11.27
CDY52874	Canola	nucleus	29.67	11.25
CDY06115	Canola	nucleus	26.01	10.57
CDX95673	Canola	cytosol	11.37	8.84
CDY27338	Canola	nucleus, plastid	24.05	8.75
CDY37083	Canola	plastid	24.05	8.72
CDX83383	Canola	nucleus, plastid	23.79	8.52
CDY14410	Canola	nucleus	26.41	8.07
CDY07678	Canola	nucleus	26.41	7.35
CDX95672	Canola	plastid	7.19	5.09
PGSC0003DMT400011842	Potato	nucleus	3.27	3.62
CDY71637	Canola	nucleus	2.35	2.43
Os02t0114033-00	Rice	nucleus	1.96	1.73
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078IGU6	UniProt:A0A078IGU6	EnsemblPlants:CDY48619
ProteinID:CDY48619	ProteinID:CDY48619.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00091381001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF845	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0004EECFE0	SEG:seg	:	:	:	:

Description

BnaC09g20660DBnaC09g20660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGU6]

Coordinates

chrLK032782:-:40667..44631

Molecular Weight (calculated)

86881.5 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.468

Length

765 amino acids

Sequence
(BLAST)

001: MKRDFDEISE EEWQQHSFNP SRVLKQPRAP KTTTTRTPRR RRQQPNPSPP IESFAYRRPS KAIESDEDCV VVEDSGSGES DSDVKIVNGG DDLLLDDEEE
101: EEEAKVVVVR RARVGRRFVI EDEEGSEEDE VEVEVEEVSS SEGEDGGGGD GDEDVVGKAL QKCAKISADL RKELYGSSSG VTTCDRYSEV ESSTVRIVTQ
201: TDIDEACKAE DSDFQPILKP YQLVGVNFLL LLYKKGIEGA ILADEMGLGK TIQAITYLTL LNHLNNDPGP HLVVCPASVL ENWERELRKW CPSFNVLQYH
301: GAARAAYSRE LNSLSKAGKL PPFNVLLVCY SLFERHSEQQ KDDRKVLKRW RWSCVLMDEA HALKDKNSYR WKNLMSVARN ANQRLMLTGT PLQNDLHELW
401: SLLEFMLPDI FTTENVDLKK LLNAEDTELI TRMKSILGPF ILRRLKSDVM QQLVPKIQRV EYVHMEKKQE DTYKEAIEDY RAASQARVLK LSSKSLAKAL
501: PKRQISNYFT QFRKIANHPL LIRRIYSDED VIRIARKLHP IGAFGFECSL ERVIEEVKSY NDFRIHQLLL QYGVNNTKGT LSDKHVMLSA KCRTLAELLP
601: SMKKSGNRVL IFSQWTSMLD ILEWTLDVIG VTYRRLDGST QVTDRQTIVD TFNNDKSIFA CLLSTRAGGQ GLNLTGADTV IIHDMDFNPQ IDRQAEDRCH
701: RIGQTKPVTI FRLVTKSTVD ENIYEIAKRK LVLDAAVLES GVHVDDDGDT PEKTMGEILA SLLMA

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.