Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G57300.2 | Thale cress | cytosol | 85.2 | 81.49 |
| CDY30994 | Canola | nucleus | 35.03 | 80.62 |
| CDX88940 | Canola | nucleus | 87.3 | 77.75 |
| CDY06115 | Canola | nucleus | 97.83 | 76.53 |
| KRG95191 | Soybean | nucleus | 67.28 | 64.73 |
| VIT_08s0007g09020.t01 | Wine grape | nucleus | 68.3 | 64.61 |
| KRH33202 | Soybean | nucleus | 63.68 | 64.29 |
| KRH66858 | Soybean | nucleus | 66.8 | 64.23 |
| Solyc04g016370.2.1 | Tomato | nucleus | 65.38 | 62.57 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 59.4 | 59.85 |
| OQU92590 | Sorghum | nucleus | 54.58 | 57.22 |
| TraesCS4B01G162000.1 | Wheat | nucleus | 56.82 | 55.95 |
| TraesCS4D01G159900.1 | Wheat | nucleus | 56.69 | 55.89 |
| TraesCS4A01G147000.1 | Wheat | nucleus | 56.55 | 55.68 |
| HORVU4Hr1G046140.4 | Barley | nucleus | 56.62 | 54.83 |
| Zm00001d029180_P002 | Maize | nucleus | 56.42 | 54.49 |
| Zm00001d047471_P002 | Maize | nucleus | 56.08 | 52.71 |
| CDY47176 | Canola | cytosol | 12.36 | 38.4 |
| CDY53848 | Canola | cytosol | 14.39 | 27.5 |
| CDY30755 | Canola | cytosol | 14.32 | 27.26 |
| CDX81370 | Canola | cytosol | 14.12 | 27.15 |
| CDY57125 | Canola | cytosol | 14.12 | 27.15 |
| CDY04120 | Canola | cytosol | 13.37 | 25.92 |
| CDY48619 | Canola | nucleus, plastid | 13.44 | 25.88 |
| CDX92595 | Canola | nucleus | 15.14 | 24.94 |
| CDX74702 | Canola | cytosol | 14.05 | 23.79 |
| CDY18960 | Canola | cytosol | 13.99 | 23.71 |
| CDY18857 | Canola | nucleus | 16.23 | 22.78 |
| CDY24695 | Canola | nucleus | 16.02 | 22.41 |
| CDY18840 | Canola | nucleus | 16.16 | 21.98 |
| CDY13907 | Canola | nucleus | 15.68 | 21.81 |
| CDY02609 | Canola | nucleus | 15.21 | 21.23 |
| CDY05261 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 16.16 | 21.01 |
| CDX75208 | Canola | cytosol | 14.12 | 17.39 |
| CDX68802 | Canola | cytosol | 14.26 | 17.3 |
| CDY56279 | Canola | cytosol | 14.53 | 15.93 |
| CDX76767 | Canola | cytosol, nucleus, plastid | 14.73 | 15.77 |
| CDY52874 | Canola | nucleus | 20.16 | 14.72 |
| CDY08401 | Canola | nucleus | 19.96 | 14.66 |
| CDY67658 | Canola | cytosol, nucleus | 10.59 | 13.82 |
| CDX81444 | Canola | nucleus | 15.27 | 13.29 |
| CDY37209 | Canola | nucleus | 15.21 | 13.29 |
| CDY27338 | Canola | nucleus, plastid | 18.33 | 12.83 |
| CDY37083 | Canola | plastid | 18.33 | 12.8 |
| CDY68094 | Canola | nucleus | 10.59 | 12.51 |
| CDX83383 | Canola | nucleus, plastid | 17.85 | 12.32 |
| CDX95672 | Canola | plastid | 7.88 | 10.74 |
| CDX95673 | Canola | cytosol | 7.13 | 10.67 |
| CDY14410 | Canola | nucleus | 16.23 | 9.55 |
| CDY07678 | Canola | nucleus | 16.29 | 8.73 |
| CDY71637 | Canola | nucleus | 4.34 | 8.65 |
Protein Annotations
| MapMan:12.4.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078C5D7 | EnsemblPlants:CDX72050 | ProteinID:CDX72050 |
| ProteinID:CDX72050.1 | ncoils:Coil | InterPro:DBINO | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006338 |
| GO:GO:0006351 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0031011 | EnsemblPlantsGene:GSBRNA2T00155839001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR020838 | InterPro:IPR038718 | InterPro:Ino80 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF13892 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51413 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF868 | SMART:SM00487 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI0004EE314A | SEG:seg | : | : | : |
Description
BnaC08g28240D
Coordinates
chrLK031795:-:2044078..2051321
Molecular Weight (calculated)
167858.0 Da
IEP (calculated)
9.214
GRAVY (calculated)
-0.617
Length
1473 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDPSRRHSRY ANLFDLEPLM NFRIPRHEDE SDYYGSSSQD ETRGNQGGVV ANYGNGVKRG TSSGTKKRKR WTEVDDDVED GDDHYSQHVT EEHYRAMLGE
0101: HMQRFKNRSK ESRGNHTPLL GVPVRKSNVG INRGRNDHHR RFYDVDTSSN FAADAIPQRR GSYRESNVTP KIAYEPSYLD IGEGVVYKIP PSYDKLVASL
0201: SLPSFSDIHV DDFYLKGALD LRSLAELMAR DKRSGARSRY GMGEPRPQYD SLQARVKALS ASSSSPNFSL KVSEDAMNSV VPEGAAGTTA RTILSEGGVL
0301: QVHYVKVLEK GDTYEIVQRS LPKKLKVKDD PAVIEKTERD KIRKAWINIV RRDIPKHHRV FTTFHRKQSI DAKRFADGCQ REVRMKVARS FKLPRSAPIR
0401: TRKISRDMLL FWKRFDKQMA EERKKQEKEA AEALKREQEL REAQRQQQRL NFLIKQTELY SHFMQNKTDA MPSESLPLGD ENLMEDPEDA KMKEDALNAA
0501: REAVSKQRKI TDAFDTEYMK LQQTSDMEGP SIDVSVSGSG NIDLHNPSTM PVTSTVQTPE MFKGTLKEYQ MKGLQWLVNC YEQGLNGILA DEMGLGKTIQ
0601: AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ LLVTDEKYFR RVKWQYMVLD
0701: EAQAIKSSTS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPMV FDSHEQFNEW FSKGIENHAE HGGTLNEHQL NRLHAILKPF MLRRVKRDVV
0801: SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GHFNEKKILN LMNIVIQLRK ASSLVCNHPE LFERNEGSSY LYFGGMSNSL LPPPFGELED
0901: VHYSGGHNPI TYEIPKLLQN EMLQNSETFC SSIGKGLSRE SFLKNFNIFS PEYILGSTFP ADSSVDQAVS GSGAFGFSRL MDLSPSEVGY LALCSVMERL
1001: LFSILKWERQ FLDEIVDSFM ESMDGDNMNT VQTRAVTRML LMPSKVDTSL LKGRVGTGPT CHSIESLVIS HQDRLLSSIK LLHSAYTFIP KARAPPISVH
1101: CSDRNSAYRI TEEMHQPWLK RLLIGFARTS EANGPRKPSS LPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK LLTDSGKLQT LDILLKRLRA
1201: GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQQ RNDIFVFLLS TRAGGLAMDR AHRLGQTKDV TVYRLICKET VEEKILHRAS
1301: QKNTVQQLVM TGGHVQGDDV FGTADVVSLL MDDAEAAQLE QKFRELPLQV KDKQKKKQPM KRIRIDAEGD ATLEELDDTA ERQDNGQEPS QEPETTKPSN
1401: KKRKSAPTPK SRVPQKAKEE ENGEGDDTLQ PQRTKRVKRQ TKSINESLEP VFSASVTPTN GEFNPSSSNV DAD
0101: HMQRFKNRSK ESRGNHTPLL GVPVRKSNVG INRGRNDHHR RFYDVDTSSN FAADAIPQRR GSYRESNVTP KIAYEPSYLD IGEGVVYKIP PSYDKLVASL
0201: SLPSFSDIHV DDFYLKGALD LRSLAELMAR DKRSGARSRY GMGEPRPQYD SLQARVKALS ASSSSPNFSL KVSEDAMNSV VPEGAAGTTA RTILSEGGVL
0301: QVHYVKVLEK GDTYEIVQRS LPKKLKVKDD PAVIEKTERD KIRKAWINIV RRDIPKHHRV FTTFHRKQSI DAKRFADGCQ REVRMKVARS FKLPRSAPIR
0401: TRKISRDMLL FWKRFDKQMA EERKKQEKEA AEALKREQEL REAQRQQQRL NFLIKQTELY SHFMQNKTDA MPSESLPLGD ENLMEDPEDA KMKEDALNAA
0501: REAVSKQRKI TDAFDTEYMK LQQTSDMEGP SIDVSVSGSG NIDLHNPSTM PVTSTVQTPE MFKGTLKEYQ MKGLQWLVNC YEQGLNGILA DEMGLGKTIQ
0601: AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ LLVTDEKYFR RVKWQYMVLD
0701: EAQAIKSSTS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPMV FDSHEQFNEW FSKGIENHAE HGGTLNEHQL NRLHAILKPF MLRRVKRDVV
0801: SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GHFNEKKILN LMNIVIQLRK ASSLVCNHPE LFERNEGSSY LYFGGMSNSL LPPPFGELED
0901: VHYSGGHNPI TYEIPKLLQN EMLQNSETFC SSIGKGLSRE SFLKNFNIFS PEYILGSTFP ADSSVDQAVS GSGAFGFSRL MDLSPSEVGY LALCSVMERL
1001: LFSILKWERQ FLDEIVDSFM ESMDGDNMNT VQTRAVTRML LMPSKVDTSL LKGRVGTGPT CHSIESLVIS HQDRLLSSIK LLHSAYTFIP KARAPPISVH
1101: CSDRNSAYRI TEEMHQPWLK RLLIGFARTS EANGPRKPSS LPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK LLTDSGKLQT LDILLKRLRA
1201: GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQQ RNDIFVFLLS TRAGGLAMDR AHRLGQTKDV TVYRLICKET VEEKILHRAS
1301: QKNTVQQLVM TGGHVQGDDV FGTADVVSLL MDDAEAAQLE QKFRELPLQV KDKQKKKQPM KRIRIDAEGD ATLEELDDTA ERQDNGQEPS QEPETTKPSN
1401: KKRKSAPTPK SRVPQKAKEE ENGEGDDTLQ PQRTKRVKRQ TKSINESLEP VFSASVTPTN GEFNPSSSNV DAD
0001: MDPSRRPPKD SPYANLFDLE PLMKFRIPKP EDEVDYYGSS SQDESRSTQG GVVANYSNGS KSRMNASSKK RKRWTEAEDA EDDDDLYNQH VTEEHYRSML
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
0101: GEHVQKFKNR SKETQGNPPH LMGFPVLKSN VGSYRGRKPG NDYHGRFYDM DNSPNFAADV TPHRRGSYHD RDITPKIAYE PSYLDIGDGV IYKIPPSYDK
0201: LVASLNLPSF SDIHVEEFYL KGTLDLRSLA ELMASDKRSG VRSRNGMGEP RPQYESLQAR MKALSPSNST PNFSLKVSEA AMNSAIPEGS AGSTARTILS
0301: EGGVLQVHYV KILEKGDTYE IVKRSLPKKL KAKNDPAVIE KTERDKIRKA WINIVRRDIA KHHRIFTTFH RKLSIDAKRF ADGCQREVRM KVGRSYKIPR
0401: TAPIRTRKIS RDMLLFWKRY DKQMAEERKK QEKEAAEAFK REQEQRESKR QQQRLNFLIK QTELYSHFMQ NKTDSNPSEA LPIGDENPID EVLPETSAAE
0501: PSEVEDPEEA ELKEKVLRAA QDAVSKQKQI TDAFDTEYMK LRQTSEMEGP LNDISVSGSS NIDLHNPSTM PVTSTVQTPE LFKGTLKEYQ MKGLQWLVNC
0601: YEQGLNGILA DEMGLGKTIQ AMAFLAHLAE EKNIWGPFLV VAPASVLNNW ADEISRFCPD LKTLPYWGGL QERTILRKNI NPKRMYRRDA GFHILITSYQ
0701: LLVTDEKYFR RVKWQYMVLD EAQAIKSSSS IRWKTLLSFN CRNRLLLTGT PIQNNMAELW ALLHFIMPML FDNHDQFNEW FSKGIENHAE HGGTLNEHQL
0801: NRLHAILKPF MLRRVKKDVV SELTTKTEVT VHCKLSSRQQ AFYQAIKNKI SLAELFDSNR GQFTDKKVLN LMNIVIQLRK VCNHPELFER NEGSSYLYFG
0901: VTSNSLLPHP FGELEDVHYS GGQNPIIYKI PKLLHQEVLQ NSETFCSSVG RGISRESFLK HFNIYSPEYI LKSIFPSDSG VDQVVSGSGA FGFSRLMDLS
1001: PSEVGYLALC SVAERLLFSI LRWERQFLDE LVNSLMESKD GDLSDNNIER VKTKAVTRML LMPSKVETNF QKRRLSTGPT RPSFEALVIS HQDRFLSSIK
1101: LLHSAYTYIP KARAPPVSIH CSDRNSAYRV TEELHQPWLK RLLIGFARTS EANGPRKPNS FPHPLIQEID SELPVVQPAL QLTHRIFGSC PPMQSFDPAK
1201: LLTDSGKLQT LDILLKRLRA GNHRVLLFAQ MTKMLNILED YMNYRKYKYL RLDGSSTIMD RRDMVRDFQH RSDIFVFLLS TRAGGLGINL TAADTVIFYE
1301: SDWNPTLDLQ AMDRAHRLGQ TKDVTVYRLI CKETVEEKIL HRASQKNTVQ QLVMTGGHVQ GDDFLGAADV VSLLMDDAEA AQLEQKFREL PLQVKDRQKK
1401: KTKRIRIDAE GDATLEELED VDRQDNGQEP LEEPEKPKSS NKKRRAASNP KARAPQKAKE EANGEDTPQR TKRVKRQTKS INESLEPVFS ASVTESNKGF
1501: DPSSSAN
Arabidopsis Description
INO80DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.