CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74702	Canola	cytosol	96.2	96.09
AT2G44980.2	Thale cress	cytosol	88.84	88.03
VIT_15s0021g02180.t01	Wine grape	cytosol	67.89	69.01
PGSC0003DMT400066819	Potato	cytosol	28.88	67.66
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	46.49	65.91
GSMUA_AchrUn_...	Banana	cytosol	36.48	65.36
KRH75253	Soybean	cytosol, nucleus, plastid	65.94	65.26
HORVU4Hr1G088540.8	Barley	cytosol	61.8	60.88
TraesCS5A01G541400.1	Wheat	cytosol	61.68	60.77
TraesCS4B01G372600.1	Wheat	cytosol	61.45	60.54
OQU93492	Sorghum	cytosol	62.6	59.98
Zm00001d048552_P005	Maize	cytosol	62.14	59.73
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	60.18	59.3
GSMUA_AchrUn_...	Banana	cytosol, nucleus	19.91	52.11
CDY47176	Canola	cytosol	21.06	38.61
CDX81370	Canola	cytosol	23.36	26.5
CDY57125	Canola	cytosol	23.36	26.5
CDY53848	Canola	cytosol	23.48	26.46
CDY30755	Canola	cytosol	23.48	26.36
CDX92595	Canola	nucleus	25.66	24.94
CDY24695	Canola	nucleus	26.81	22.13
CDY18857	Canola	nucleus	26.58	22.02
CDY13907	Canola	nucleus	26.81	22.0
CDY04120	Canola	cytosol	19.22	21.97
CDY48619	Canola	nucleus, plastid	19.33	21.96
CDY02609	Canola	nucleus	25.43	20.95
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.81	20.56
CDY18840	Canola	nucleus	23.71	19.02
CDX75208	Canola	cytosol	25.89	18.81
CDX68802	Canola	cytosol	26.01	18.62
CDY56279	Canola	cytosol	25.78	16.68
CDY67658	Canola	cytosol, nucleus	21.63	16.65
CDX76767	Canola	cytosol, nucleus, plastid	25.89	16.35
CDY68094	Canola	nucleus	21.63	15.08
Os03t0352500-01	Rice	nucleus	3.57	14.49
CDY30994	Canola	nucleus	10.59	14.38
CDX72050	Canola	cytosol	23.71	13.99
CDY37209	Canola	nucleus	26.81	13.82
CDX81444	Canola	nucleus	26.81	13.76
CDX88940	Canola	nucleus	25.43	13.36
CDX95673	Canola	cytosol	13.46	11.89
CDY06115	Canola	nucleus	23.59	10.89
CDY52874	Canola	nucleus	24.05	10.36
CDY08401	Canola	nucleus	23.82	10.32
CDY27338	Canola	nucleus, plastid	23.02	9.51
CDY37083	Canola	plastid	23.02	9.48
CDX83383	Canola	nucleus, plastid	22.21	9.04
CDY14410	Canola	nucleus	24.51	8.51
CDY07678	Canola	nucleus	24.51	7.75
CDX95672	Canola	plastid	3.91	3.15
Os03t0352450-00	Rice	nucleus	1.04	1.96
CDY71637	Canola	nucleus	0.46	0.54

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078FX16	UniProt:A0A078FX16
EnsemblPlants:CDY18960	ProteinID:CDY18960	ProteinID:CDY18960.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00006180001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF52949	UniParc:UPI0004EE995A	SEG:seg	:

Description

BnaC04g03900DBnaC04g03900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX16]

Coordinates

chrLK032090:+:673571..677751

Molecular Weight (calculated)

98074.1 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.293

Length

869 amino acids

Sequence
(BLAST)

001: MEYQRRLEAA TNIILTANSK ASHAPPDCRE FGVTATLKPH QVEGVSWLIH KYLLGVNVVL GNSPIPIEQM GLGKTLQAIS FLSYLKFHQG LRGPFLVLCP
101: LSVTDGWVAE INRFTPKLEV IRYVGDKDCR RDLRKVMYDH VNKSSKGSLL PFDVLLTTYD IALVDQDFLS QIPWQYAVID EAQRLKNPNS VLYNVLLEQF
201: LIPRRLLITG TPIQNNLTEL WALMHFCMPL VFGTLDQFLS AFKDTGESLS GLDASNVKET YKSLKFILGA FMLRRTKSLL IESGNLVLPP LTELTVMVPL
301: VSLQKKIYMS ILRKELPGLL ALSSGASTHT SLQNIVIQLR KACSHPYLFP GIEPEPFEEG EHLAQASGKL LVLDQLLKRL HDIGHRVLLF SQMTSTLDIL
401: QDFMELRKYS YERLDGSVRA EERFAAIKSF SAKTERGLDS EADASNAFVF MISTRAGGVG LNLVAADTVI FYEQDWNPQV DKQALQRAHR IGQISHVLSI
501: NLVSEHTVEE VILRRAERKL QLSHNVVGDT TEDKEEDRGD LRSLVFGLQR FDPEETHNEE SDNLKMVEIS SLAEKVVAIR QNVEPDKEAR KFEINTSETL
601: RGSSSSAASV YSELDEASYL SWVEKLKEAA RSSKDENVME LGDRKNVSEE RRERVEAARK KAEEKKLATW EEHGYESLSV EEPIFPEDVD STSDAGSVQF
701: VFGDCTNPST VSQEPAIIFS CVDDSGTWGR GGMFNALSKL SSTVPDAYHR ASEFKDLHLG DVHLIKIDDN DEQQNTEDSK RLWVALAVTQ SYRPKRKVPR
801: SSISIPDLER CLAKASFSAS QRSASLHMPR IGYQDGSDRS QWYTVERLLR KYSSIFAVKI FVYYYRRSP

Best Arabidopsis Sequence Match ( AT2G44980.2 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL
101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHV KKSSKGHFLP FDVLLTTYDI ALVDQDFLSQ IPWQYAIIDE AQRLKNPNSV
201: LYNVLLEQFL IPRRLLITGT PIQNNLTELW ALMHFCMPLV FGTLDQFLSA FKETGDGLSG LDVSNDKETY KSLKFILGAF MLRRTKSLLI ESGNLVLPPL
301: TELTVMVPLV SLQKKIYTSI LRKELPGLLE LSSGGSNHTS LQNIVIQLRK ACSHPYLFPG IEPEPFEEGE HLVQASGKLL VLDQLLKRLH DSGHRVLLFS
401: QMTSTLDILQ DFMELRRYSY ERLDGSVRAE ERFAAIKNFS AKTERGLDSE VDGSNAFVFM ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI
501: GQISHVLSIN LVTEHSVEEV ILRRAERKLQ LSHNVVGDNM EEKEEDGGDL RSLVFGLQRF DPEEIHNEES DNLKMVEISS LAEKVVAIRQ NVEPDKEERR
601: FEINSSDTLL GNTSSASLDS ELDEASYLSW VEKLKEAARS SKDEKIIELG NRKNLSEERN LRIEAARKKA EEKKLATWGA HGYQSLSVEE PILPDDVDSS
701: SDAGSVNFVF GDCTNPSTVS HEPAIIFSCV DDSGNWGRGG MFDALSKLSN TVPTAYHRAS EFKDLHLGDL HLIKIDDNDD QQNTQASKPL WVAVAVTQSY
801: NSRRKVPRSS ISIPDLESCL AKASFSASQK SASLHMPRIG YQDGSDRSQW YTVERLLRKY SSIFTVKIFV YYYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.