Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090650.1.1 | Tomato | cytosol, nucleus, plastid | 95.15 | 57.59 |
| GSMUA_AchrUn_... | Banana | cytosol | 68.19 | 52.16 |
| VIT_15s0021g02180.t01 | Wine grape | cytosol | 77.09 | 33.45 |
| CDX74702 | Canola | cytosol | 68.46 | 29.2 |
| KRH75253 | Soybean | cytosol, nucleus, plastid | 69.0 | 29.16 |
| CDY18960 | Canola | cytosol | 67.66 | 28.88 |
| AT2G44980.2 | Thale cress | cytosol | 67.39 | 28.51 |
| TraesCS5A01G541400.1 | Wheat | cytosol | 66.04 | 27.78 |
| OQU93492 | Sorghum | cytosol | 67.66 | 27.67 |
| HORVU4Hr1G088540.8 | Barley | cytosol | 65.23 | 27.44 |
| Zm00001d048552_P005 | Maize | cytosol | 66.31 | 27.21 |
| TraesCS4B01G372600.1 | Wheat | cytosol | 64.42 | 27.1 |
| TraesCS4D01G364600.1 | Wheat | cytosol, mitochondrion | 62.8 | 26.42 |
| Bra004881.1-P | Field mustard | nucleus | 34.23 | 19.63 |
| PGSC0003DMT400038561 | Potato | cytosol | 31.81 | 15.53 |
| PGSC0003DMT400040011 | Potato | cytosol | 31.54 | 15.52 |
| PGSC0003DMT400079102 | Potato | nucleus | 34.5 | 12.1 |
| PGSC0003DMT400058376 | Potato | nucleus | 33.42 | 11.65 |
| Os03t0352450-00 | Rice | nucleus | 1.62 | 1.31 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 0.27 | 0.3 |
| PGSC0003DMT400011842 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400000170 | Potato | nucleus | 0.0 | 0.0 |
| Os03t0352500-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:CHD1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043044 |
| InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1CG93 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| EnsemblPlantsGene:PGSC0003DMG400025981 | PGSC:PGSC0003DMG400025981 | EnsemblPlants:PGSC0003DMT400066819 | PFscan:PS51192 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF838 |
| SMART:SM00487 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000294DBF7 | : |
Description
Helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400025981]
Coordinates
chr1:-:69853907..69863450
Molecular Weight (calculated)
41748.3 Da
IEP (calculated)
7.725
GRAVY (calculated)
0.079
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEQRLIAA AKFVYTGDSV ADDPPVNSVD LGVKATLKPH QVEGVSWLVR RYLLGVNVIL GDEMGLGKTL QAISLLSYLK VYLKTPGPFL VLCPLSVTDG
101: WMSEMANFAP KLRVLTYTGE KEHRRNLRRK IYECMNREAS DAKSLPFDVL LTTYDIVLLD EDFLSQVPWC YAIIDEAQRL KNPSSVLYNV LKERFVMPRK
201: LLMTGTPIQN NLSELWALLH FCMPSVFGTL EQFLSAFKEA GDPSCPDADK AKEQFKILKY VIGAFMLRRT KSQLIELGTL VLPPLTEITV MAPLVALQKK
301: VYMSILRKEL TQLLALASGA PNTRSLQNIV IQLRKACSHP YLFAGIEPEP YEEGEHLVQV LYLLSADCHC S
101: WMSEMANFAP KLRVLTYTGE KEHRRNLRRK IYECMNREAS DAKSLPFDVL LTTYDIVLLD EDFLSQVPWC YAIIDEAQRL KNPSSVLYNV LKERFVMPRK
201: LLMTGTPIQN NLSELWALLH FCMPSVFGTL EQFLSAFKEA GDPSCPDADK AKEQFKILKY VIGAFMLRRT KSQLIELGTL VLPPLTEITV MAPLVALQKK
301: VYMSILRKEL TQLLALASGA PNTRSLQNIV IQLRKACSHP YLFAGIEPEP YEEGEHLVQV LYLLSADCHC S
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP
Arabidopsis Description
CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.