CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g02180.t01	Wine grape	cytosol	68.68	70.53
PGSC0003DMT400066819	Potato	cytosol	29.16	69.0
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	47.72	68.35
CDY18960	Canola	cytosol	65.26	65.94
CDX74702	Canola	cytosol	65.26	65.86
AT2G44980.2	Thale cress	cytosol	65.72	65.79
GSMUA_AchrUn_...	Banana	cytosol	36.33	65.77
Bra004881.1-P	Field mustard	nucleus	47.49	64.45
TraesCS5A01G541400.1	Wheat	cytosol	61.96	61.68
HORVU4Hr1G088540.8	Barley	cytosol	61.5	61.22
TraesCS4B01G372600.1	Wheat	cytosol	61.5	61.22
OQU93492	Sorghum	cytosol	62.76	60.75
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	60.59	60.32
Zm00001d048552_P005	Maize	cytosol	61.62	59.85
GSMUA_AchrUn_...	Banana	cytosol, nucleus	19.25	50.9
KRH28662	Soybean	cytosol	21.87	25.16
KRH76800	Soybean	cytosol	21.75	25.07
KRG89166	Soybean	nucleus	19.59	22.87
KRH49484	Soybean	nucleus	19.48	22.68
KRH50913	Soybean	nucleus	26.65	22.12
KRH21031	Soybean	nucleus	26.77	22.02
KRH11241	Soybean	nucleus	26.77	21.92
KRH02212	Soybean	nucleus	26.42	21.91
KRH05279	Soybean	nucleus	10.25	19.87
KRG91253	Soybean	nucleus	24.03	19.66
KRH35559	Soybean	nucleus	23.92	19.59
KRH27613	Soybean	nucleus	23.69	19.57
KRH52357	Soybean	nucleus	26.2	15.97
KRH61691	Soybean	nucleus	26.2	15.95
KRH33202	Soybean	nucleus	24.6	14.8
KRG95191	Soybean	nucleus	25.28	14.5
KRH66858	Soybean	nucleus	25.17	14.43
KRH73568	Soybean	nucleus	15.15	13.65
KRH14560	Soybean	nucleus	25.63	12.76
Os03t0352500-01	Rice	nucleus	2.96	12.15
KRH02187	Soybean	nucleus	17.43	11.06
KRH38118	Soybean	nucleus	24.49	10.49
KRH71872	Soybean	nucleus	24.26	10.44
KRH42374	Soybean	nucleus	24.94	10.12
KRH40427	Soybean	nucleus	23.92	9.45
KRH48113	Soybean	nucleus	23.92	9.43
KRH58495	Soybean	nucleus	25.06	9.42
KRH00799	Soybean	nucleus	23.8	9.41
KRH06623	Soybean	nucleus	23.23	9.26
KRH50934	Soybean	nucleus	25.74	5.96
Os03t0352450-00	Rice	nucleus	1.48	2.83

Protein Annotations

EntrezGene:100797182	MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:ACUP02000179
EnsemblPlantsGene:GLYMA_01G073400	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:K7K2G5	ProteinID:KRH75252.1
EnsemblPlants:KRH75253	ProteinID:KRH75253	ProteinID:KRH75253.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	SUPFAM:SSF52949	UniParc:UPI000295D96A	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:14050892..14097609

Molecular Weight (calculated)

99258.6 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.195

Length

878 amino acids

Sequence
(BLAST)

001: MNLSYEQRLQ VVARLILDED SRPGDAPLYQ EELGLRVTLK PHQVEGVSWL IRRYKLGVNV VLGDEMGLGK TLQAISFLSY LKVCRLSLGP FLVICPLSVT
101: DGWVSEIVKF TPKLKVFKYV GDKECRRNLR MKIHEYVTGQ SSTLNVLLPF DVLLTSYDIA LMDQDFLSQI SWQYAIIDEA QRLKNPSSVL FNVLKDCYIM
201: PRRLLMTGTP IQNNLSELWA LMYFCMPSVF GTPDQFLSMF KDISDLSPVH DTPKVKERLK ILRSVLGAFM LRRTKSKLIE CGNLVLPPLT VTTVLVPLVI
301: LQKKVYMSIL RKELHKLLAL SFGTSNHESL QNIVIQLRKA CSHPYLFPGI ESEPYEEGEH LVQASGKLLI LDQLLQKLHY SGHRVLLFAQ MTHTLDILQD
401: FLELRKYSYE RLDGSIRAEE RFAAIRSFSS SSANMGLNSE ADQNEAFVFI ISTRAGGVGL NLVAADTVIF YEQDWNPQVD KQALQRAHRI GQMNHVLCIN
501: LVTERTVEEV IMRRAERKLL LSLNVIGDNI LKDDNKEPSE VGSGDLKSII FGLHMFDPTE INDGNHRNMN IPEICAMADR VLAMRDEQIL DNDERKFEVN
601: PTNILKGDAV KERDSASLSC DLGLDEASYL SWVKKFEEVS KSSCDSITDL RSRRNVDEEK SLKIESARKK AEEKKLARWE ALGYQSLNVK DAISPTGNDI
701: ASASGSVHFV YGDCTAPSNV CSSEPAIIFS CVDTSGHWGH GGMFDALSKL STSIGDAYQW ASEHGDLHLG DLHLIRLDDC CGEQMDGNAP KMVALAVVQS
801: YNPRHKIRRS EISLPHLESS LTKAAYSAAQ NSASIHMPRI GYQDGSDRSE WYTIERLLRK YASIYNINIY VYYYRRSH

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.