Factsheet for Zm00001d048552_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU93492	Sorghum	cytosol	93.81	93.5
TraesCS5A01G541400.1	Wheat	cytosol	79.31	81.29
HORVU4Hr1G088540.8	Barley	cytosol	79.2	81.18
TraesCS4B01G372600.1	Wheat	cytosol	78.87	80.84
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	77.99	79.93
GSMUA_AchrUn_...	Banana	cytosol	38.16	71.13
PGSC0003DMT400066819	Potato	cytosol	27.21	66.31
VIT_15s0021g02180.t01	Wine grape	cytosol	61.73	65.26
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	43.14	63.62
CDX74702	Canola	cytosol	60.18	62.53
CDY18960	Canola	cytosol	59.73	62.14
KRH75253	Soybean	cytosol, nucleus, plastid	59.85	61.62
AT2G44980.2	Thale cress	cytosol	59.4	61.23
Bra004881.1-P	Field mustard	nucleus	43.03	60.12
Zm00001d007978_P003	Maize	cytosol	20.8	23.86
Zm00001d033827_P006	Maize	cytosol	20.91	22.29
Zm00001d040831_P021	Maize	nucleus	25.33	20.45
Zm00001d009312_P028	Maize	nucleus	25.0	20.0
Zm00001d024816_P007	Maize	cytosol	22.68	18.47
Zm00001d006798_P002	Maize	nucleus	22.79	18.46
Zm00001d002656_P002	Maize	nucleus	18.92	17.47
Zm00001d045109_P008	Maize	cytosol	24.23	16.42
Zm00001d015595_P001	Maize	cytosol	3.54	16.24
Os03t0352500-01	Rice	nucleus	3.43	14.49
Zm00001d029180_P002	Maize	nucleus	23.23	13.77
Zm00001d047471_P002	Maize	nucleus	23.34	13.47
Zm00001d022405_P051	Maize	nucleus	24.34	12.76
Zm00001d007089_P003	Maize	nucleus	22.79	11.86
Zm00001d051507_P007	Maize	nucleus	23.56	10.33
Zm00001d017660_P021	Maize	nucleus	23.45	10.28
Zm00001d006428_P002	Maize	nucleus	24.89	10.27
Zm00001d021541_P002	Maize	nucleus	25.22	10.25
Zm00001d014977_P002	Maize	nucleus	22.57	9.43
Zm00001d037346_P007	Maize	nucleus	24.0	5.69
Os03t0352450-00	Rice	nucleus	1.11	2.18

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1D6PMM2	ProteinID:AQL10331.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF853	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
SUPFAM:SSF52949	UniParc:UPI0008444549	EnsemblPlantsGene:Zm00001d048552	EnsemblPlants:Zm00001d048552_P005	EnsemblPlants:Zm00001d048552_T005	SEG:seg

Description

Probable helicase CHR10

Coordinates

chr9:-:158537485..158552745

Molecular Weight (calculated)

101657.0 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.214

Length

904 amino acids

Sequence
(BLAST)

001: MAATATSYER RLLAAADLVL SADAQDKGIR LPDLGVTADL KPHQLHGVAW LIRRYRLGVN VVLDGQMGLG KTLQAISLLS YLKIHRIAPG PFLVLCPLSV
101: TDGWLSEFSK FCPSFRVMQY VGGKLHRRDL RRTIYEDVQK ASTSSRSFEL PFDVLMTTYD IALMDQDFLS QIPWHYAVID EAQRLKNPSS VLYNVLEQRF
201: IMPRRLLLTG TPIQNNLSEL WALMHFCLPS IFGKLDEFLS TFKEAGESLT GDEANKAKGQ FKIIKHVLKA FMLRRTKFLL IESGILALPP LTELTVMVPL
301: TQLQKKLYMS VLRKELPTLI SFARGSSRHQ SLQNIVIQLR KVCSHPYLFS GIEPEPYVEG EHLIQASGKL IVLDLILKKL HECGHRVLLF AQMTQTLDIL
401: QDFLELRNYT YERLDGSVRA EERFAAIRNF SSQSTKGLIR DDNRSEAFVF MISTRAGGVG LNLIGADTVI FYEQDWNPQA DKQALQRAHR IGQLNHVLSI
501: NLVSQRTIEE VIMRRADRKL KLSHNIIGEE DGTDGKGGDP GIEASDMRSI IFGLHLFDPA DTATETIDED ITAETFSVEK LAKLKTMSEK VVMMRSHESS
601: EKDERAFEIN PNMTDDSGTV IRRASDSIRI DPGLNEAAYL SWVKKFKEAS ISSEDATVGF GRQRAAPEEK LLKHDVNKQK IEEKRLAKWE SLGYQTLAVK
701: EPDITASQNI SDAGSIQFVY GDCTNPSKVC PAKPAIIFSC IDNSGTWGHG GMFDALTSLS TCIPDAYHRA SEFDDLHMGD LHLIQLDEGN CTRSLDAPLW
801: VALAIVQSYN PRRKVPRSEI SMSDLELCIS KAAFSAAQHS AAIHMPRIGY QGGSQRSEWY TIERLLRKHS SLHGIDIFVY YFQRRQTDCQ IVTQVGHADD
901: STQA

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.