CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048552_P005	Maize	cytosol	93.5	93.81
TraesCS5A01G541400.1	Wheat	cytosol	80.37	82.65
HORVU4Hr1G088540.8	Barley	cytosol	80.37	82.65
TraesCS4B01G372600.1	Wheat	cytosol	79.82	82.09
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	79.05	81.29
GSMUA_AchrUn_...	Banana	cytosol	39.14	73.2
PGSC0003DMT400066819	Potato	cytosol	27.67	67.66
VIT_15s0021g02180.t01	Wine grape	cytosol	62.51	66.32
Solyc01g090650.1.1	Tomato	cytosol, nucleus, plastid	43.77	64.76
CDX74702	Canola	cytosol	60.86	63.45
KRH75253	Soybean	cytosol, nucleus, plastid	60.75	62.76
CDY18960	Canola	cytosol	59.98	62.6
AT2G44980.2	Thale cress	cytosol	59.98	62.03
Bra004881.1-P	Field mustard	nucleus	43.33	60.74
EER97913	Sorghum	cytosol	20.84	24.29
EER93549	Sorghum	cytosol	21.06	22.85
KXG32501	Sorghum	nucleus	25.69	21.05
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.82	18.37
KXG26914	Sorghum	nucleus	19.07	17.82
KXG33813	Sorghum	nucleus	21.61	17.01
KXG19483	Sorghum	cytosol	24.81	16.99
OQU92590	Sorghum	nucleus	23.48	15.16
Os03t0352500-01	Rice	nucleus	3.31	14.02
KXG36860	Sorghum	nucleus	25.03	13.14
OQU85588	Sorghum	nucleus	24.15	10.8
KXG36264	Sorghum	nucleus	25.36	10.34
OQU84199	Sorghum	nucleus	22.6	9.67
OQU76185	Sorghum	nucleus	24.37	5.46
Os03t0352450-00	Rice	nucleus	1.1	2.18

Protein Annotations

MapMan:12.4.1.1.1	Gene3D:3.40.220.10	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1Z5SC51	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	EnsemblPlants:OQU93492	ProteinID:OQU93492	ProteinID:OQU93492.1	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF853
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3001G543100	SUPFAM:SSF52540
SUPFAM:SSF52949	UniParc:UPI000B42656F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:80676133..80698232

Molecular Weight (calculated)

101777.0 Da

IEP (calculated)

7.268

GRAVY (calculated)

-0.261

Length

907 amino acids

Sequence
(BLAST)

001: MAAPATSYER RLLAAADLVL SADAQDQGTR LPDLGVTADL KPHQLHGVAW LIRRYRLGVN VVLGDEMGLG KTLQAISLLS YLKIQRIAPG PFLVLCPLSV
101: TDGWLSEFSK FCPSFRVLQY VGDKLHRRDL RRTIYEDVQK ASTSSRSNDL PFDVLMTTYD IALMDQDFLS QIPWHYAVID EAQRLKNSSS VLYNVLEQRF
201: IMPRRLLLTG TPIQNNLSEL WALMHFCLPS IFGKLDEFLS TFKEAGESLT VDEANKAKGQ FKILKHILKA FMLRRTKALL IESGILVLPP LTELTVMVPL
301: TQLQKKLYMS VLRKELPTLI SFTRGSSRHQ SLQNIVIQLR KACSHPYLFS GIEPEPYVEG EHLVQASGKL IVLDFVLKKL HECGHRVLLF AQMTQTLDIL
401: QDFLELRKYT YERLDGSVRA EERFAAIRNF SSQSTKGLIR DDNQSGAFVF MISTRAGGVG LNLIGADTVI FYEQDWNPQA DKQALQRAHR IGQLNHVLSI
501: NLVSQRTIEE VIMRRANRKL KLSHNIIGEE DGTDGKGGDP GHEASDMRSI IFGLHLFDPA DTATETINED TAAETISVEK LAKLKTMSEK VVMMRSHESS
601: EKDERAFEIN PNMTDDNGTV IRRASDSIRI DPGLNEAAYL SWVEKFKEAS GSSEDATVEF GRQRAAPEEK LLKRDVNKKK IEEKRLAKWE SLGYQTLAVK
701: EPDITTSQNI SAAGSIQFVY GDCTDPSKVC PKKPAIIFSC IDNSGTWGHG GMFDALTSLS TCIPDAYHRA SKFDDLHMGD LHLIQLDAEA NCTRSLDAPL
801: WVALAIVQSY NPRRKVPRSE ISMSDLELCL SKAAFSAAPH SAAIHMPRIG YQGGSQRSEW YTIERLLRKY SSLHGIDIFV YYFQRSSRQQ ADSNIGHADD
901: SAQSNPS

Best Arabidopsis Sequence Match ( AT2G44980.3 )
(BLAST)

001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLGDEMGL GKTLQAISFL SYLKFRQGLP
101: GPFLVLCPLS VTDGWVSEIN RFTPNLEVLR YVGDKYCRLD MRKSMYDHVK KSSKGHFLPF DVLLTTYDIA LVDQDFLSQI PWQYAIIDEA QRLKNPNSVL
201: YNVLLEQFLI PRRLLITGTP IQNNLTELWA LMHFCMPLVF GTLDQFLSAF KETGDGLSGL DVSNDKETYK SLKFILGAFM LRRTKSLLIE SGNLVLPPLT
301: ELTVMVPLVS LQKKIYTSIL RKELPGLLEL SSGGSNHTSL QNIVIQLRKA CSHPYLFPGI EPEPFEEGEH LVQASGKLLV LDQLLKRLHD SGHRVLLFSQ
401: MTSTLDILQD FMELRRYSYE RLDGSVRAEE RFAAIKNFSA KTERGLDSEV DGSNAFVFMI STRAGGVGLN LVAADTVIFY EQDWNPQVDK QALQRAHRIG
501: QISHVLSINL VTEHSVEEVI LRRAERKLQL SHNVVGDNME EKEEDGGDLR SLVFGLQRFD PEEIHNEESD NLKMVEISSL AEKVVAIRQN VEPDKEERRF
601: EINSSDTLLG NTSSASLDSE LDEASYLSWV EKLKEAARSS KDEKIIELGN RKNLSEERNL RIEAARKKAE EKKLATWGAH GYQSLSVEEP ILPDDVDSSS
701: DAGSVNFVFG DCTNPSTVSH EPAIIFSCVD DSGNWGRGGM FDALSKLSNT VPTAYHRASE FKDLHLGDLH LIKIDDNDDQ QNTQASKPLW VAVAVTQSYN
801: SRRKVPRSSI SIPDLESCLA KASFSASQKS ASLHMPRIGY QDGSDRSQWY TVERLLRKYS SIFTVKIFVY YYRRSP

Arabidopsis Description

CHR10Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.