CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78332
OQU87495

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	OQU78332	AT5G56630.1	21798944
AT2G02090.1	OQU87495	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002656_P002	Maize	nucleus	89.91	89.17
Os04t0566100-00	Rice	cytosol	71.58	80.53
TraesCS2D01G400400.1	Wheat	cytosol	70.24	77.59
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	69.31	77.45
TraesCS2B01G421200.3	Wheat	cytosol	69.93	76.21
VIT_01s0010g02080.t01	Wine grape	cytosol	51.49	68.68
KRG89166	Soybean	nucleus	52.94	68.35
GSMUA_Achr4P25930_001	Banana	cytosol	56.54	68.03
KRH49484	Soybean	nucleus	52.42	67.51
AT2G02090.1	Thale cress	cytosol, plastid	52.73	67.1
Bra017422.1-P	Field mustard	cytosol	52.52	66.93
CDY04120	Canola	cytosol	52.21	66.71
CDY48619	Canola	nucleus, plastid	52.42	66.54
Solyc02g014770.2.1	Tomato	nucleus	50.46	66.4
EER97913	Sorghum	cytosol	20.29	25.32
EER93549	Sorghum	cytosol	21.11	24.52
OQU93492	Sorghum	cytosol	17.82	19.07
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.73	18.72
KXG33813	Sorghum	nucleus	21.32	17.97
KXG32501	Sorghum	nucleus	19.67	17.25
OQU92590	Sorghum	nucleus	21.83	15.09
KXG19483	Sorghum	cytosol	19.46	14.27
KXG36860	Sorghum	nucleus	21.32	11.99
OQU85588	Sorghum	nucleus	22.55	10.8
OQU84199	Sorghum	nucleus	20.7	9.48
KXG36264	Sorghum	nucleus	21.01	9.17
OQU76185	Sorghum	nucleus	21.94	5.26
PGSC0003DMT400011842	Potato	nucleus	2.68	3.76

Protein Annotations

MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1B6PMK8	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0009628
GO:GO:0009987	GO:GO:0071494	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EnsemblPlants:KXG26914	ProteinID:KXG26914	ProteinID:KXG26914.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF845	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3006G180700	SUPFAM:SSF52540	UniParc:UPI0001C8061D
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:53490257..53497908

Molecular Weight (calculated)

108766.0 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.556

Length

971 amino acids

Sequence
(BLAST)

001: MHRGFEEISD DEWSNHTFKP SRVLKRPNQR PTQPPPPINS FAYNPKARSA AGTSTATVIL SDDDSDFDLG ADGGTRRAAK SQHALKRPHN GAPSRPSPPV
101: KPFSRNPQPS NAAAAFGVSD SEDDDFDFPT SPSRTSNLRR KGKSQRPLKG PQLKPSRAPP PVNSFNHNPK RSKFAAGVGL SDSEDDEFDL IETSSLHRRA
201: KRQHGQKRPQ HKPHLQDPQS FGSSRRNSKP SKAAATTGLS DSDDDDFDIT DDDFDLPALP SRTSRPRRTT SRRLTSFAID ISEEDEEDLA DDDFDYQDPR
301: PPQQRPSGRR FVIGDDDDSD VPIAVEDDDG VDWSELEKED EDEGYNGEIS VNGEDPKGDV VGMALRKCSR ISSDLRKELF GSSAQDCESY AEIDASTCRI
401: VTQEDVNAAC TSEKSEFEPV LKPYQLVGVN FLLLLHRKSI GGAILADEMG LGKTVQAVTY LTLLRHLYND PGPHLIVCPA SVLENWEREL RKWCPSFSII
501: MFHGAARTTY SKELSSLGKA GCPAPFNVLL VGYSLFERRS AQQKDDRRAL KRWQWSCVLM DEAHVLKDKG SFRWRNLMAV AQHARQRLML TGTPLQNDLH
601: ELWSLLEFMM PDIFAIGDVD LKKLLNAEDR ELISRIKSIL GPFILRRLKS DVMQQLVPKI QQVKFVVMGT EQSIAYKNAI DEYRATCQAR SAKSSNDISN
701: NIVGLIPKRQ ISNYFTQFRK IANHPLLIRR IYSDKDVDRI ARLLYPKGAF GFECSLERAI QELKNYNDFD IHQLLLSYGD VGTKGALTDE HVFSSAKCQA
801: LGKLLPSLAN DGHRVLIFSQ WTTMLDILEW ALEVIGVTYR RLDGGTAVTE RQTIVDTFNN DLSIFACLLS TRAGGQGLNL VGADTVIIHD MDFNPQMDRQ
901: AEDRCHRIGQ QKPVTIYRLV TKESVDEKIY EIARRKLVLD AAILHSGAEL DNSTDVPEKT MGEILASLLL V

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.