Factsheet for VIT_01s0010g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g02850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02090.1	VIT_11s0016g02850.t01	AT5G56630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89166	Soybean	nucleus	80.77	78.19
KRH49484	Soybean	nucleus	80.49	77.72
CDY04120	Canola	cytosol	76.92	73.68
Bra017422.1-P	Field mustard	cytosol	77.06	73.62
Solyc02g014770.2.1	Tomato	nucleus	74.59	73.58
AT2G02090.1	Thale cress	cytosol, plastid	76.65	73.13
CDY48619	Canola	nucleus, plastid	76.65	72.94
GSMUA_Achr4P25930_001	Banana	cytosol	72.8	65.68
Zm00001d015595_P001	Maize	cytosol	16.48	60.91
Os04t0566100-00	Rice	cytosol	70.6	59.56
TraesCS2A01G403300.2	Wheat	cytosol, nucleus	67.86	56.85
TraesCS2D01G400400.1	Wheat	cytosol	68.41	56.66
TraesCS2B01G421200.3	Wheat	cytosol	67.99	55.56
KXG26914	Sorghum	nucleus	68.68	51.49
Zm00001d002656_P002	Maize	nucleus	67.99	50.56
VIT_04s0023g01610.t01	Wine grape	cytosol	27.75	26.61
VIT_15s0021g02180.t01	Wine grape	cytosol	22.94	19.53
VIT_05s0020g01780.t01	Wine grape	nucleus	27.47	18.52
VIT_05s0020g02960.t01	Wine grape	nucleus	27.88	18.4
VIT_08s0007g09020.t01	Wine grape	nucleus	29.53	13.81
VIT_04s0008g05880.t01	Wine grape	nucleus	26.79	13.25
VIT_06s0009g03750.t01	Wine grape	nucleus	29.67	12.25
VIT_08s0007g06370.t01	Wine grape	nucleus	30.36	10.77
VIT_01s0011g01480.t01	Wine grape	nucleus	26.1	8.81
VIT_15s0046g02290.t01	Wine grape	plastid	27.2	8.75
VIT_05s0020g02020.t01	Wine grape	nucleus	25.55	6.96
PGSC0003DMT400011842	Potato	nucleus	3.43	3.62
Os02t0114033-00	Rice	nucleus	3.43	2.89
Os02t0114000-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100252853	wikigene:100252853	MapMan:12.4.1.2.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ProteinID:CBI27512
ProteinID:CBI27512.3	ncoils:Coil	UniProt:D7TAI9	EMBL:FN595754	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006950	GO:GO:0006974	GO:GO:0008150	GO:GO:0009628
GO:GO:0009987	GO:GO:0071494	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EntrezGene:LOC100252853	wikigene:LOC100252853	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF845	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	TIGR:TC61387	UniParc:UPI0001BE2AA9	ArrayExpress:VIT_01s0010g02080
EnsemblPlantsGene:VIT_01s0010g02080	EnsemblPlants:VIT_01s0010g02080.t01	unigene:Vvi.11500	RefSeq:XP_003631348	RefSeq:XP_003631348.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:18955322..18986835

Molecular Weight (calculated)

82915.9 Da

IEP (calculated)

4.877

GRAVY (calculated)

-0.375

Length

728 amino acids

Sequence
(BLAST)

001: MKRDFTEISD DEWDNHSFKL SRALKKSQGA PPPIESFSYR PEDPQVSPED VSDGSSDDCV EIKEDLEDDD AEVLAAPVSR GRRFVVDEDS DEDFAEVVEV
101: KSGTEEEAEE EVEEDDVVGK ALQKCAKISA ELRRELYGSS VTACDRYAEV ESSSVRIVTQ DDIDVACGAE DSDFQPVLKP YQLVGVNFLL LLYRKGIGGA
201: ILADEMGLGK TIQAITYLTL LKHMDNDPGP HLVVCPASVL ENWERELKKW CPSFTVIQYH GAGRTHYSKE LNSLSKAGLP PPFNVLLVCY SLFERHSQQQ
301: KDDRKLLKRW QWSCVLMDEA HALKDKNSYR WKNLMSVARN ANQRLMLTGT PLQNDLHELW SLLEFMMPDL FTTGDVDLKK LLNAEDRDLI ARMKSILGPF
401: ILRRLKSDVM QQLVPKIQRV EYVYMEKNQE DAYKEAIEEY RAASRARIAK ISDVNRNSVV RVLPRRQISN YFVQFRKIAN HPLLVRRIYN DEDIVRFAKR
501: LYPMGVFGFE CNLDRVIEEL KSYNDFSIHR LLLYYDVADK KGILPDKHVM VSAKCRELAE LLPTLKQGGH RVLIFSQWTS MLDILEWTLD VIGVTYRRLD
601: GSTQVTDRQT IVDTFNNDTS IFACLLSTRA GGQGLNLTGA DTVVIHDMDF NPQIDRQAED RCHRIGQTKP VTIYRLVTKD TVDENVYEIA KRKLILDAAV
701: LESGVEVDDE AGMSEKTMGE ILSALLLG

Best Arabidopsis Sequence Match ( AT2G02090.1 )
(BLAST)

001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG

Arabidopsis Description

ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.