Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d038775_P002 | |
| Zm00001d043563_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G02090.1 | Zm00001d038775_P002 | AT5G56630.1 | 21798944 |
| AT2G02090.1 | Zm00001d043563_P002 | AT5G56630.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015595_P001 | Maize | cytosol | 18.59 | 92.39 |
| KXG26914 | Sorghum | nucleus | 89.17 | 89.91 |
| Os04t0566100-00 | Rice | cytosol | 69.77 | 79.14 |
| TraesCS2D01G400400.1 | Wheat | cytosol | 69.36 | 77.25 |
| TraesCS2A01G403300.2 | Wheat | cytosol, nucleus | 68.44 | 77.1 |
| TraesCS2B01G421200.3 | Wheat | cytosol | 69.05 | 75.87 |
| VIT_01s0010g02080.t01 | Wine grape | cytosol | 50.56 | 67.99 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 55.98 | 67.91 |
| KRG89166 | Soybean | nucleus | 51.58 | 67.15 |
| KRH49484 | Soybean | nucleus | 51.17 | 66.45 |
| AT2G02090.1 | Thale cress | cytosol, plastid | 51.69 | 66.32 |
| Bra017422.1-P | Field mustard | cytosol | 51.58 | 66.27 |
| CDY04120 | Canola | cytosol | 51.28 | 66.05 |
| Solyc02g014770.2.1 | Tomato | nucleus | 49.64 | 65.85 |
| CDY48619 | Canola | nucleus, plastid | 51.38 | 65.75 |
| Zm00001d033827_P006 | Maize | cytosol | 21.45 | 24.76 |
| Zm00001d007978_P003 | Maize | cytosol | 19.82 | 24.62 |
| Zm00001d024816_P007 | Maize | cytosol | 21.45 | 18.92 |
| Zm00001d048552_P005 | Maize | cytosol | 17.47 | 18.92 |
| Zm00001d006798_P002 | Maize | nucleus | 20.84 | 18.28 |
| Zm00001d040831_P021 | Maize | nucleus | 19.51 | 17.05 |
| Zm00001d009312_P028 | Maize | nucleus | 19.61 | 16.99 |
| Zm00001d029180_P002 | Maize | nucleus | 21.86 | 14.03 |
| Zm00001d045109_P008 | Maize | cytosol | 19.1 | 14.02 |
| Zm00001d047471_P002 | Maize | nucleus | 21.96 | 13.72 |
| Zm00001d022405_P051 | Maize | nucleus | 20.74 | 11.77 |
| Zm00001d051507_P007 | Maize | nucleus | 22.57 | 10.72 |
| Zm00001d017660_P021 | Maize | nucleus | 22.27 | 10.57 |
| Zm00001d007089_P003 | Maize | nucleus | 18.28 | 10.31 |
| Zm00001d006428_P002 | Maize | nucleus | 21.04 | 9.41 |
| Zm00001d021541_P002 | Maize | nucleus | 21.25 | 9.35 |
| Zm00001d014977_P002 | Maize | nucleus | 20.12 | 9.11 |
| Zm00001d037346_P007 | Maize | nucleus | 20.53 | 5.27 |
Protein Annotations
| EntrezGene:103646072 | MapMan:12.4.1.2.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A1D6E342 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | ProteinID:ONM14971.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF845 | SMART:SM00487 | SMART:SM00490 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000843FA0F | EnsemblPlantsGene:Zm00001d002656 | EnsemblPlants:Zm00001d002656_P002 |
| EnsemblPlants:Zm00001d002656_T002 | SEG:seg | : | : | : | : |
Description
Protein CHROMATIN REMODELING 19
Coordinates
chr2:-:18457417..18475288
Molecular Weight (calculated)
109754.0 Da
IEP (calculated)
6.542
GRAVY (calculated)
-0.508
Length
979 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRAFEEISD EEWSNHTFEP SRVLKRPNQR PSQPPPSIDS FIYNPKACSA AGTSTATVVL SDDDSDFDLG ADGGSRRAAK SQRVLKRPHN GAPSRPSLPV
101: KSSRRNPQPS NAAAAFGFSD SEDDDFDLPT SPLRTSSLRR KGKNQRPLKA PQLKPHLRAP PPPNSSSHNP KRSKFASDVK LSNSEDDDFD LTKTLSLNSS
201: TNRQHIQKRP QHKPRLQHRQ SFGSSCGNQK HSKAVATTRL SDSDDDDFNI TDNDFDLPAS HSRISRPRRT TSCRRLTSFA IDISEEDEED LADDDFDYQD
301: PRPPQQRSSG RRFVVGDDDD SDVPVALEEE DGVNWSELEK EDVDEDYNGV RSVHVEEPEG DVVGMALHKC SRISSDLRKE LFGSSAQNCE SYCEIDASTC
401: GIVTQEDVNA ACTREKSGFE PVLKPYQLVG VNFLLLLHRK SIGGAILADE MGLGKTVQAV TYLNLLQHLY NDPGPHLIVC PASVLENWER ELRKWCPSFS
501: IIMFHGAART TYSKELSSLG KAGCPAPFNV LLVGYSLFER RSAQQKDDRR ALKRWRWSCV LMDEAHVLKD KGSFRWRNLM AVAQHARQRL MLTGTPLQND
601: LHELWSLLEF MMPDIFATGD VDLKKLLNAE DRELISQIKS ILGPFILRRL KSDVMQQLVP KIQHVKFVVM GTEQSEAYKN AINEYRAACQ ARSAKSSDGI
701: SNNVAGLIPK RQISNYFTQF RKIANHPLLI RCIYGDKDVD RIARLLYPKG AFGFECSLER AIQELKNYSD FNIHQLLLSY GDVGTKGALK DEHVFASAKC
801: QFLLCVQALG ELLPSLANDG HRVLIFSQWT TMLDILEWAL EIIGVTYRRL DGGTAVTERQ TIVDTFNNDL SIFACLLSTR AGGQGLNLVG ADTVIIHDMD
901: FNPQMDRQAE DRCHRIGQQK PVTIYRLVTK DSVDENIYEI ARRKLVLDAA ILHSGAELDN STDVPEKTMG EILASLLLV
101: KSSRRNPQPS NAAAAFGFSD SEDDDFDLPT SPLRTSSLRR KGKNQRPLKA PQLKPHLRAP PPPNSSSHNP KRSKFASDVK LSNSEDDDFD LTKTLSLNSS
201: TNRQHIQKRP QHKPRLQHRQ SFGSSCGNQK HSKAVATTRL SDSDDDDFNI TDNDFDLPAS HSRISRPRRT TSCRRLTSFA IDISEEDEED LADDDFDYQD
301: PRPPQQRSSG RRFVVGDDDD SDVPVALEEE DGVNWSELEK EDVDEDYNGV RSVHVEEPEG DVVGMALHKC SRISSDLRKE LFGSSAQNCE SYCEIDASTC
401: GIVTQEDVNA ACTREKSGFE PVLKPYQLVG VNFLLLLHRK SIGGAILADE MGLGKTVQAV TYLNLLQHLY NDPGPHLIVC PASVLENWER ELRKWCPSFS
501: IIMFHGAART TYSKELSSLG KAGCPAPFNV LLVGYSLFER RSAQQKDDRR ALKRWRWSCV LMDEAHVLKD KGSFRWRNLM AVAQHARQRL MLTGTPLQND
601: LHELWSLLEF MMPDIFATGD VDLKKLLNAE DRELISQIKS ILGPFILRRL KSDVMQQLVP KIQHVKFVVM GTEQSEAYKN AINEYRAACQ ARSAKSSDGI
701: SNNVAGLIPK RQISNYFTQF RKIANHPLLI RCIYGDKDVD RIARLLYPKG AFGFECSLER AIQELKNYSD FNIHQLLLSY GDVGTKGALK DEHVFASAKC
801: QFLLCVQALG ELLPSLANDG HRVLIFSQWT TMLDILEWAL EIIGVTYRRL DGGTAVTERQ TIVDTFNNDL SIFACLLSTR AGGQGLNLVG ADTVIIHDMD
901: FNPQMDRQAE DRCHRIGQQK PVTIYRLVTK DSVDENIYEI ARRKLVLDAA ILHSGAELDN STDVPEKTMG EILASLLLV
001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG
Arabidopsis Description
ETL1ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.