Factsheet for Zm00001d009312_P028

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32501	Sorghum	nucleus	95.13	97.11
Zm00001d040831_P021	Maize	nucleus	94.69	95.54
Os01t0367900-01	Rice	nucleus	90.71	92.59
CDY47176	Canola	cytosol	36.99	88.19
KRH21031	Soybean	nucleus	80.09	84.82
KRH11241	Soybean	nucleus	80.27	84.61
VIT_05s0020g01780.t01	Wine grape	nucleus	80.44	84.17
KRH50913	Soybean	nucleus	78.67	84.03
PGSC0003DMT400079102	Potato	nucleus	78.41	83.74
CDY18857	Canola	nucleus	77.61	83.6
Bra040221.1-P	Field mustard	nucleus	77.52	83.51
Solyc06g054560.2.1	Tomato	nucleus	78.41	83.51
KRH02212	Soybean	nucleus	78.05	83.29
GSMUA_Achr3P23910_001	Banana	nucleus	78.67	83.16
AT3G06400.3	Thale cress	nucleus	77.61	82.97
PGSC0003DMT400058376	Potato	nucleus	77.52	82.33
CDY24695	Canola	nucleus	76.46	82.05
Solyc01g067390.2.1	Tomato	nucleus	77.17	81.88
Bra020751.1-P	Field mustard	nucleus	76.19	81.77
AT5G18620.2	Thale cress	nucleus	77.35	81.53
TraesCS3D01G068900.1	Wheat	nucleus	79.73	80.37
TraesCS3B01G083400.1	Wheat	nucleus	80.62	80.34
CDX92595	Canola	nucleus	63.54	80.31
TraesCS3A01G069900.2	Wheat	nucleus	80.0	80.0
CDY13907	Canola	nucleus	74.87	79.89
Bra002173.1-P	Field mustard	nucleus	74.96	79.61
HORVU3Hr1G012850.1	Barley	nucleus	78.67	78.46
CDY02609	Canola	nucleus	71.86	76.97
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	76.73	76.52
Bra023689.1-P	Field mustard	nucleus	73.81	75.75
Zm00001d007978_P003	Maize	cytosol	23.01	32.99
Zm00001d033827_P006	Maize	cytosol	23.1	30.78
Zm00001d006798_P002	Maize	nucleus	25.49	25.81
Zm00001d024816_P007	Maize	cytosol	25.31	25.77
Zm00001d048552_P005	Maize	cytosol	20.0	25.0
Zm00001d045109_P008	Maize	cytosol	24.6	20.84
Zm00001d022405_P051	Maize	nucleus	31.68	20.77
Zm00001d002656_P002	Maize	nucleus	16.99	19.61
Zm00001d007089_P003	Maize	nucleus	29.65	19.29
Zm00001d015595_P001	Maize	cytosol	2.92	16.75
Zm00001d029180_P002	Maize	nucleus	22.3	16.52
Zm00001d047471_P002	Maize	nucleus	22.74	16.4
Zm00001d017660_P021	Maize	nucleus	24.78	13.58
Zm00001d051507_P007	Maize	nucleus	24.6	13.49
Zm00001d014977_P002	Maize	nucleus	24.51	12.81
Zm00001d021541_P002	Maize	nucleus	24.78	12.58
Zm00001d006428_P002	Maize	nucleus	24.16	12.47
Zm00001d037346_P007	Maize	nucleus	26.37	7.82

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:103635205	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
UniProt:A0A1D6FIP6	ProteinID:AQK91644.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006338
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293
PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487
SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689
SUPFAM:SSF52540	UniParc:UPI000844FD47	EnsemblPlantsGene:Zm00001d009312	EnsemblPlants:Zm00001d009312_P028	EnsemblPlants:Zm00001d009312_T028	SEG:seg

Description

Putative chromatin-remodeling factor family

Coordinates

chr8:+:54220666..54232783

Molecular Weight (calculated)

130554.0 Da

IEP (calculated)

5.001

GRAVY (calculated)

-0.815

Length

1130 amino acids

Sequence
(BLAST)

0001: MAKPMKYDDE EEISSSAEEE DQSDAAGSVS GEEGDDDDED AAAPPAEEAE GEGQQEEEVD EEEIEAVTTG AGAEDEEDAG AVTAAEGDDE SQSTEDDEPV
0101: ARDKDDDDET DAVVGKREKA RLKELQKMKK HKIQEILDTQ NAAIDADMNN KGKGRLKYLL QQTEIFAHFA KGSQSNEKKP RGRVESICRG RHASKMTEEE
0201: EDEEYLKEEE DALAGAGGTR LVSQPSCIKG KMRDYQLAGL NWLIRLYENG INGILADEMG LGKTLQTISL LGYLHEFRGI TGPHMVVAPK STLGNWMKEI
0301: QRFCPILRAV KFLGNPEERN HIRDDLLQPG KFDVCVTSFE MAIKEKSALR RFSWRYIIID EAHRIKNENS LLSKTMRIYN TNYRLLITGT PLQNNLHELW
0401: ALLNFLLPEI FSSAETFDEW FQISGENDQQ EVVQQLHKVL RPFLLRRLKS DVEKGLPPKK ETILKVGMSQ MQKQYYRALL QKDLEVINAG GERKRLLNIA
0501: MQLRKCCNHP YLFQGAEPGP PYTTGEHLVE NAGKMVLLDK LLPKLKERDS RVLIFSQMTR LLDILEDYLM YRGYQYCRID GNTGGEDRDA SIEAFNKPGS
0601: EKFVFLLSTR AGGLGINLAT ADVVVLYDSD WNPQADLQAQ DRAHRIGQKK EVQVFRFCTE YTIEEKVIER AYKKLALDAL VIQQGRLAEQ KTVNKDDLLQ
0701: MVRFGAEMVF SSKDSTITDE DIDRIIAKGE ETTAELDAKM KKFTEDAIKF KMDDNAELYD FDDEKDENKV DFKKLVSDNW IEPPRRERKR NYSESDYFKQ
0801: ALRQGAPAKP REPRIPRMPH LHDFQFFNNQ RLNELYEKEV RYLMQANQKK DTIDGEDEDQ LEPLTAEEQE EKEQLLEEGF ASWTRRDFNT FIRACEKYGR
0901: NDIKSISSEM EGKTEEEVQR YAKVFKERYK ELTDYDRIIK NIERGEARIS RKDEIMKAIG KKLDRYKNPW LELKIQYGQN KGKFYNEECD RFMLCMVHKL
1001: GYGNWDELKA AFRMSPLFRF DWFVKSRTTQ ELARRCDTLI RLVEKENQEY DEQERQARKE KRLAKNTTPT KRAALRNSEG ESAPLSSFKR RRQSLMDDYV
1101: GSVRDNSLSS SLLLTYVHLL KNVYRSAHQM

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.