Factsheet for TraesCS3D01G068900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G069900.2	Wheat	nucleus	98.48	97.7
TraesCS3B01G083400.1	Wheat	nucleus	97.41	96.3
HORVU3Hr1G012850.1	Barley	nucleus	90.9	89.94
CDY47176	Canola	cytosol	36.13	85.44
Os01t0367900-01	Rice	nucleus	81.36	82.38
KXG32501	Sorghum	nucleus	80.55	81.57
Zm00001d040831_P021	Maize	nucleus	80.2	80.27
KRH21031	Soybean	nucleus	75.91	79.76
Zm00001d009312_P028	Maize	nucleus	80.37	79.73
KRH11241	Soybean	nucleus	75.56	79.01
KRH50913	Soybean	nucleus	74.49	78.92
KRH02212	Soybean	nucleus	74.22	78.56
CDY18857	Canola	nucleus	73.33	78.36
TraesCS1D01G099600.1	Wheat	nucleus	77.34	78.32
Bra040221.1-P	Field mustard	nucleus	73.24	78.27
AT3G06400.3	Thale cress	nucleus	73.77	78.24
VIT_05s0020g01780.t01	Wine grape	nucleus	75.2	78.06
PGSC0003DMT400079102	Potato	nucleus	73.42	77.79
CDY24695	Canola	nucleus	72.97	77.68
Solyc06g054560.2.1	Tomato	nucleus	73.51	77.66
Bra020751.1-P	Field mustard	nucleus	72.88	77.59
PGSC0003DMT400058376	Potato	nucleus	73.33	77.26
Solyc01g067390.2.1	Tomato	nucleus	73.24	77.09
AT5G18620.2	Thale cress	nucleus	73.59	76.96
CDX92595	Canola	nucleus	61.2	76.73
CDY13907	Canola	nucleus	71.99	76.2
GSMUA_Achr3P23910_001	Banana	nucleus	72.61	76.15
Bra002173.1-P	Field mustard	nucleus	71.99	75.85
CDY02609	Canola	nucleus	68.69	72.99
Bra023689.1-P	Field mustard	nucleus	70.92	72.21
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	72.97	72.2
TraesCS7D01G069700.1	Wheat	cytosol	23.82	34.27
TraesCS2D01G365000.1	Wheat	cytosol	23.82	32.52
TraesCS4D01G053600.2	Wheat	cytosol	23.73	31.86
TraesCS1D01G089200.2	Wheat	nucleus	25.87	25.51
TraesCS4D01G364600.1	Wheat	cytosol, mitochondrion	19.45	24.72
TraesCS2D01G400400.1	Wheat	cytosol	17.57	22.41
TraesCS7D01G148900.4	Wheat	nucleus	24.8	19.79
TraesCS2D01G130900.1	Wheat	nucleus	29.79	19.33
TraesCS3D01G403600.1	Wheat	nucleus	20.61	18.81
TraesCS4D01G159900.1	Wheat	nucleus	21.41	16.06
TraesCS7D01G531100.1	Wheat	nucleus	24.17	12.48
TraesCS2D01G234200.1	Wheat	nucleus	24.26	12.11
TraesCS6D01G039800.1	Wheat	nucleus, plastid	23.82	12.07
TraesCS7D01G206700.2	Wheat	nucleus	26.76	8.91

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	Gene3D:1.20.5.1190	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006338	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884	InterPro:IPR036306
InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFscan:PS51192	PFscan:PS51194	PFscan:PS51293
PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487
SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G068900	EnsemblPlants:TraesCS3D01G068900.1	TIGR:cd00046	TIGR:cd00079	TIGR:cd00167
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:30293260..30301000

Molecular Weight (calculated)

128773.0 Da

IEP (calculated)

6.316

GRAVY (calculated)

-0.809

Length

1121 amino acids

Sequence
(BLAST)

0001: MARPARRRVV EEEEESSSSG EEQQDQSGSG EEAGGGEAKE EVDEEEIEAV TTGAGADEEE EEDGGEEDEE EPESDEDDEA EDPAGIPEVG KQERARLKQL
0101: QKLKKQKIQE ILQTQNAAIN ADMNKKGKGR LKYLLQQTEI FAHFAEGSQT KEKKPRGRGR PASKRRAVEE DDEEYLQEEE DALASSVGTH LLVQPSCING
0201: QMRDYQLAGL NWLIRLYENG INGILADEMG LGKTLQTISL MGYLHEFRGI TGPHMVVAPK STLGNWMNEI ARFCPLLRAV KFLGNPEERN HIREKLLQPG
0301: KFDVCVTSFE MAIKEKNALK RFSWRYIIID EAHRIKNENS LLSKTMRLFS TNYRLLITGT PLQNNLHELW SLLNFLLPEI FSSADTFDEW FQITGENDQQ
0401: EVVQQLHKVL RPFLLRRLKS DVEKGLPPKK EIILKVGMSQ MQKQYYRGLL QKDLEVINAG GERKRLLNIA MQLRKCCNHP YLFQGAEPGP PYTTGDHLIE
0501: TAGKMVLLDK LLPKLKDRDS RVLIFSQMTR LLDILEDYLI YRGYQFCRID GSTGGQDRDA SIDAFNKPGS EKFVFLLSTR AGGLGINLAT ADVVILYDSD
0601: WNPQADLQAQ DRAHRIGQKK EVQVFRFCTE YTIEEKVIER AYKKLALDAL VIQQGRLSGQ KTVNKDDLLQ MVRYGAEMVF SSKDSTITDE DVDRIIAKGE
0701: ETKAALDAKM KKFTEDAIKF KMDDTAELYD FDGDKEENEA DFKKIVAENL VVELPRRERI RNYNESEYFK QALRQAAPAK PKELRIPKMP TLHDFQFFNS
0801: QRLNELYEKE VRHLVQTNQK KDTIDGEDEG TDQVEPFTAE ELEEKQRLLE AGFATWTKRD FNTFIRACEK YGRNDIKGIS SEMEGKTEEE VQRYAEVFKE
0901: RYTELSDHER IIKNIERGEA RITRKDEIMT AIGKKLDRYK NPWLELKVQY GTNKGKFYNE ECDRFMLCMA HKLGYGKWDE LRSAFRMSPL FRFDWFVKAR
1001: SAQELARRCD TLVRLVEKEN QEYDERERQA RKEKRLAKKM TPTKQKMTPT KQKTTPTKQA ASRVSDGETA PANPSKKNKT PTKQKMTPTK RAGETAPATS
1101: SKKRRQSLMD DFLGSGKKGK A

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.