CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02212	Soybean	nucleus	98.02	97.92
KRH21031	Soybean	nucleus	91.87	91.1
KRH11241	Soybean	nucleus	92.06	90.86
CDY47176	Canola	cytosol	40.64	90.72
VIT_05s0020g01780.t01	Wine grape	nucleus	89.32	87.5
PGSC0003DMT400079102	Potato	nucleus	86.67	86.67
Bra040221.1-P	Field mustard	nucleus	85.92	86.65
CDY18857	Canola	nucleus	85.82	86.56
AT3G06400.3	Thale cress	nucleus	86.39	86.47
Solyc06g054560.2.1	Tomato	nucleus	86.29	86.05
CDY24695	Canola	nucleus	84.78	85.19
PGSC0003DMT400058376	Potato	nucleus	85.54	85.06
AT5G18620.2	Thale cress	nucleus	86.11	84.98
Bra020751.1-P	Field mustard	nucleus	84.5	84.9
Solyc01g067390.2.1	Tomato	nucleus	85.07	84.51
GSMUA_Achr8P09960_001	Banana	nucleus	84.97	83.16
CDY13907	Canola	nucleus	82.33	82.25
GSMUA_Achr3P23910_001	Banana	nucleus	82.8	81.95
Bra002173.1-P	Field mustard	nucleus	82.33	81.86
CDX92595	Canola	nucleus	69.0	81.66
KXG32501	Sorghum	nucleus	84.22	80.49
Os01t0367900-01	Rice	nucleus	83.55	79.86
CDY02609	Canola	nucleus	79.3	79.53
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	85.16	79.52
Zm00001d040831_P021	Maize	nucleus	83.55	78.93
Zm00001d009312_P028	Maize	nucleus	84.03	78.67
TraesCS1B01G118900.2	Wheat	nucleus	82.04	78.48
TraesCS1D01G099600.1	Wheat	nucleus	81.95	78.32
Bra023689.1-P	Field mustard	nucleus	81.47	78.29
TraesCS1A01G091100.1	Wheat	nucleus	81.29	77.76
Os05t0150300-01	Rice	nucleus	83.36	76.17
TraesCS3D01G068900.1	Wheat	nucleus	78.92	74.49
TraesCS3B01G083400.1	Wheat	nucleus	79.3	73.99
TraesCS3A01G069900.2	Wheat	nucleus	78.92	73.89
HORVU1Hr1G021540.17	Barley	plasma membrane	81.76	73.24
HORVU3Hr1G012850.1	Barley	nucleus	77.13	72.02
KRH28662	Soybean	cytosol	25.43	35.26
KRH76800	Soybean	cytosol	25.33	35.17
KRH35559	Soybean	nucleus	28.36	27.99
KRG91253	Soybean	nucleus	28.36	27.96
KRH27613	Soybean	nucleus	27.88	27.75
KRG89166	Soybean	nucleus	19.57	27.53
KRH49484	Soybean	nucleus	19.38	27.19
KRH75253	Soybean	cytosol, nucleus, plastid	22.12	26.65
KRH05279	Soybean	nucleus	9.17	21.41
KRH73568	Soybean	nucleus	18.9	20.53
KRH14560	Soybean	nucleus	33.93	20.35
KRH52357	Soybean	nucleus	26.84	19.72
KRH61691	Soybean	nucleus	26.65	19.56
KRH33202	Soybean	nucleus	22.97	16.66
KRG95191	Soybean	nucleus	23.25	16.07
KRH66858	Soybean	nucleus	23.25	16.06
KRH02187	Soybean	nucleus	19.85	15.18
KRH71872	Soybean	nucleus	28.17	14.6
KRH38118	Soybean	nucleus	28.17	14.54
KRH42374	Soybean	nucleus	27.13	13.26
KRH00799	Soybean	nucleus	27.41	13.05
KRH40427	Soybean	nucleus	27.32	13.01
KRH48113	Soybean	nucleus	27.22	12.94
KRH06623	Soybean	nucleus	26.46	12.71
KRH58495	Soybean	nucleus	27.03	12.25
KRH50934	Soybean	nucleus	29.77	8.31

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	EntrezGene:100791510	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EMBL:ACUP02004717	ncoils:Coil	InterPro:DBINO	EnsemblPlantsGene:GLYMA_07G250700	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325
GO:GO:0006338	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016589	GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031491	GO:GO:0043044
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	UniProt:I1KN24	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR017884	InterPro:IPR020838	InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sf	EnsemblPlants:KRH50913	ProteinID:KRH50913	ProteinID:KRH50913.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFAM:PF09110	PFAM:PF09111	PFAM:PF13892	PFscan:PS51192	PFscan:PS51194
PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE
SMART:SM00487	SMART:SM00490	SMART:SM00717	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224
SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0002338D98	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:42869455..42880744

Molecular Weight (calculated)

123004.0 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.806

Length

1058 amino acids

Sequence
(BLAST)

0001: MGRPSKTQVS NDFSSEEEEE DASAAASHQI VDDEEELEAV ARSASSDDDD NSPDEAAEDD DEDKQDESNV DPEVSKREKA RLREMQQLKK QKVQEILDAQ
0101: NATIDADMNN RGKGRLNYLL QQTELFAHFA KGDQSSQKKA KGRGRHASKV TEEEEDEEYL KGEEDGLANT RLVTQPSCIQ GKMRDYQLAG LNWLIRLYEN
0201: GINGILADEM GLGKTLQTIS LLGYLHEFRG ITGPHMVVAP KSTLGNWMNE IRRFCPVLRA IKFLGNPDER KHIREELLVA GKFDVCVTSF EMVIKEKSAL
0301: RRFSWRYIII DEAHRIKNEN SLLSKTMRLY NTNYRLLITG TPLQNNLHEL WALLNFLLPE IFSSAETFDE WFQISGENDE HEVVQQLHKV LRPFLLRRLK
0401: SDVEKGLPPK KETILKVGMS QMQKQYYKAL LQKDLEVVNA GGERKRLLNI AMQLRKCCNH PYLFQGAEPG PPFTTGDHLI TNAGKMVLLD KLLPKLKERD
0501: SRVLIFSQMT RLLDILEDYL MFRGYQYCRI DGNTGGDDRD ASIEAFNKPG SEKFVFLLST RAGGLGINLA TADVVILYDS DWNPQVDLQA QDRAHRIGQK
0601: KEVQVFRFCT EYTIEEKVIE RAYKKLALDA LVIQQGRLAE QKTVNKDELL QMVRFGAEMV FSSKDSTITD EDIDRIIAKG EEATAELDAK MKKFTEDAIK
0701: FKMDDTAELY DFDDEKDENK FDFKKIVSEN WVEPPRRERK RNYSESEYFK QTMRQGGPTK PKEPRIPRMP QLHDFQFFNT HRLSELYEKE VRYLMQAHQK
0801: NQVKDSIDVD EPEEVGDPLT AEELEEKEQL LEEGFSSWSR KDFNAFIRAC EKYGRNDIKG IASEMEGKTQ EEVERYAKVF KERYKELNDY DRIIKNIERG
0901: EARISRKDEI MKAIGKKLDR YKNPWLELKI QYGQNKGKLY NEECDRFMIC MIHKLGYGNW DELKAAFRMS PLFRFDWFVK SRTTQEITRR CDTLIRLVEK
1001: ENQEYDERER QARKEKKLAA KSMTPSKRSM PRQTESPSLK KRKQLTMDDY LSSGKKKK

Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)

0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK

Arabidopsis Description

CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.