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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH50913 Soybean nucleus 97.92 98.02
CDY47176 Canola cytosol 40.6 90.72
KRH21031 Soybean nucleus 90.75 90.07
KRH11241 Soybean nucleus 90.75 89.65
VIT_05s0020g01780.t01 Wine grape nucleus 88.39 86.67
PGSC0003DMT400079102 Potato nucleus 86.12 86.2
Bra040221.1-P Field mustard nucleus 85.27 86.08
CDY18857 Canola nucleus 85.17 85.99
AT3G06400.3 Thale cress nucleus 85.74 85.9
Solyc06g054560.2.1 Tomato nucleus 85.93 85.77
CDY24695 Canola nucleus 84.14 84.62
Bra020751.1-P Field mustard nucleus 83.85 84.33
PGSC0003DMT400058376 Potato nucleus 84.7 84.3
AT5G18620.2 Thale cress nucleus 85.27 84.24
Solyc01g067390.2.1 Tomato nucleus 83.95 83.47
GSMUA_Achr8P09960_001 Banana nucleus 84.32 82.61
CDY13907 Canola nucleus 81.68 81.68
GSMUA_Achr3P23910_001 Banana nucleus 82.34 81.57
Bra002173.1-P Field mustard nucleus 81.68 81.3
CDX92595 Canola nucleus 68.37 80.98
KXG32501 Sorghum nucleus 83.47 79.86
Os01t0367900-01 Rice nucleus 83.29 79.67
CDY05261 Canola endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 84.51 78.99
CDY02609 Canola nucleus 78.56 78.86
Zm00001d040831_P021 Maize nucleus 82.81 78.3
TraesCS1B01G118900.2 Wheat nucleus 81.68 78.21
Zm00001d009312_P028 Maize nucleus 83.29 78.05
TraesCS1D01G099600.1 Wheat nucleus 81.4 77.87
Bra023689.1-P Field mustard nucleus 80.83 77.75
TraesCS1A01G091100.1 Wheat nucleus 81.02 77.58
Os05t0150300-01 Rice nucleus 82.72 75.65
TraesCS3D01G068900.1 Wheat nucleus 78.56 74.22
TraesCS3B01G083400.1 Wheat nucleus 79.04 73.81
TraesCS3A01G069900.2 Wheat nucleus 78.66 73.72
HORVU1Hr1G021540.17 Barley plasma membrane 81.4 72.99
HORVU3Hr1G012850.1 Barley nucleus 76.96 71.93
KRH28662 Soybean cytosol 25.5 35.39
KRH76800 Soybean cytosol 25.4 35.3
KRH35559 Soybean nucleus 28.14 27.8
KRG91253 Soybean nucleus 28.14 27.77
KRH27613 Soybean nucleus 27.57 27.47
KRG89166 Soybean nucleus 19.45 27.39
KRH49484 Soybean nucleus 19.26 27.06
KRH75253 Soybean cytosol, nucleus, plastid 21.91 26.42
KRH05279 Soybean nucleus 9.25 21.63
KRH73568 Soybean nucleus 18.6 20.23
KRH14560 Soybean nucleus 33.43 20.07
KRH52357 Soybean nucleus 26.91 19.79
KRH61691 Soybean nucleus 26.72 19.63
KRH33202 Soybean nucleus 22.66 16.45
KRG95191 Soybean nucleus 22.66 15.68
KRH66858 Soybean nucleus 22.66 15.67
KRH02187 Soybean nucleus 19.55 14.97
KRH71872 Soybean nucleus 27.86 14.45
KRH38118 Soybean nucleus 27.86 14.4
KRH42374 Soybean nucleus 27.1 13.26
KRH00799 Soybean nucleus 27.01 12.87
KRH40427 Soybean nucleus 26.91 12.83
KRH48113 Soybean nucleus 26.44 12.58
KRH06623 Soybean nucleus 25.78 12.39
KRH58495 Soybean nucleus 27.01 12.25
KRH50934 Soybean nucleus 29.08 8.13
Protein Annotations
Gene3D:1.10.10.60Gene3D:1.10.1040.30EntrezGene:100814442MapMan:12.4.1.1.4Gene3D:3.40.50.10810Gene3D:3.40.50.300
EMBL:ACUP02010299ncoils:CoilInterPro:DBINOEnsemblPlantsGene:GLYMA_17G023600GO:GO:0000166GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003682GO:GO:0003824GO:GO:0004386GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006325
GO:GO:0006338GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016569
GO:GO:0016589GO:GO:0016787GO:GO:0016818GO:GO:0016887GO:GO:0031491GO:GO:0043044
InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:Homeobox-like_sfUniProt:I1MRF4InterPro:IPR001650InterPro:IPR014001
InterPro:IPR017884InterPro:IPR020838InterPro:IPR036306InterPro:IPR038718InterPro:ISWIInterPro:ISWI_HAND-dom
InterPro:ISWI_HAND-dom_sfEnsemblPlants:KRH02212ProteinID:KRH02212ProteinID:KRH02212.1InterPro:P-loop_NTPasePFAM:PF00176
PFAM:PF00271PFAM:PF09110PFAM:PF09111PFAM:PF13892PFscan:PS51192PFscan:PS51194
PFscan:PS51293PANTHER:PTHR10799PANTHER:PTHR10799:SF887InterPro:SANT/MybInterPro:SANT_domInterPro:SLIDE
SMART:SM00487SMART:SM00490SMART:SM00717InterPro:SNF2-like_sfInterPro:SNF2_NSUPFAM:SSF101224
SUPFAM:SSF46689SUPFAM:SSF52540UniParc:UPI000233DF4DSEG:seg::
Description
hypothetical protein
Coordinates
chr17:+:1714475..1723892
Molecular Weight (calculated)
123246.0 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.798
Length
1059 amino acids
Sequence
(BLAST)
0001: MGRPSKTQVS NEFSSEEEKE EASAAAANHE IEDDDEELEA VARYVSSDDD DNSPDEAAED DDEDKQDESN VDPEVSKREK ARLREMQQLK KQKVQEILDA
0101: QNATIDADMN NRGKGRLNYL LQQTELFAHF AKGDQSSQKK AKGRGRHASK VTEEEEDEEY LKGEEDGLAN TRLVTQPSCI QGKMRDYQLA GLNWLIRLYE
0201: NGINGILADE MGLGKTLQTI SLLGYLHEFR GITGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPDE RKHIREELLV AGKFDVCVTS FEMVIKEKSA
0301: LRRFSWRYII IDEAHRIKNE NSLLSKTMRL YNTNYRLLIT GTPLQNNLHE LWALLNFLLP EIFSSAETFD EWFQISGEND EHEVVQQLHK VLRPFLLRRL
0401: KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN AGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPFTTGDHL ITNAGKMVLL DKLLPKLKER
0501: DSRVLIFSQM TRLLDILEDY LMFCGYQYCR IDGNTGGDDR DASIEAFNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ AQDRAHRIGQ
0601: KKEVQVFRFC TEYTIEEKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRFGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA KMKKFTEDAI
0701: KFKMDDTAEL YDFDDENEEN KFDFKKIVSE NWVEPPRRER KRNYSESEYF KQTMRQGGLT KPKEPRIPRM PQLHDFQFFN THRLSELYEK EVRYLMQTHQ
0801: KNQVKDSIDV DEPEEMGVPL TAEELEEKEQ LLEEGFSSWS RKDFNAFIRA CEKYGRNDIK GIASEMEGKT QEEVERYAKV FKERYKELND YDRIIKNIER
0901: GEARISRKDE IMKAIGKKLD RYRNPWLELK IQYGQNKGKL YNEECDRFMI CMIHKLGYGN WDELKAAFRM SPLFRFDWFV KSRTTQEITR RCDTLVRLVE
1001: KENQEYDERE RQARKEKKIA AKSMTPSKRS MPRQSESPSL KKRKQLTMDD YLSSGKKKK
Best Arabidopsis Sequence Match ( AT5G18620.2 )
(BLAST)
0001: MARASKREVS SDEAYSSEEE EQVNDQANVE EDDDELEAVA RSAGSDEEDV APDEAPVSDD EVVPVEDDAE EDEEDEEKAE ISKREKARLK EMQKMKKQKI
0101: QQILDSQNAS IDADMNNKGK GRIKYLLQQT ELFAHFAKSD PSPSQKKGKG RGRHSSKLTE EEEDEECLKE EEGGIVGSGG TRLLTQPACI QGKLRDYQLA
0201: GLNWLIRLYE NGINGILADE MGLGKTLQTI SLLAYLHEYR GINGPHMVVA PKSTLGNWMN EIRRFCPVLR AVKFLGNPEE RRHIREELLV AGKFDICVTS
0301: FEMAIKEKTT LRRFSWRYII IDEAHRIKNE NSLLSKTMRL FSTNYRLLIT GTPLQNNLHE LWALLNFLLP EVFSSAETFD EWFQISGEND QQEVVQQLHK
0401: VLRPFLLRRL KSDVEKGLPP KKETILKVGM SQMQKQYYKA LLQKDLEVVN GGGERKRLLN IAMQLRKCCN HPYLFQGAEP GPPYTTGDHL VTNAGKMVLL
0501: DKLLPKLKDR DSRVLIFSQM TRLLDILEDY LMYRGYQYCR IDGNTGGDER DASIEAYNKP GSEKFVFLLS TRAGGLGINL ATADVVILYD SDWNPQVDLQ
0601: AQDRAHRIGQ KKEVQVFRFC TENAIEAKVI ERAYKKLALD ALVIQQGRLA EQKTVNKDEL LQMVRYGAEM VFSSKDSTIT DEDIDRIIAK GEEATAELDA
0701: KMKKFTEDAI QFKMDDSADF YDFDDDNKDE SKVDFKKIVS ENWNDPPKRE RKRNYSEVEY FKQTLRQGAP AKPKEPRIPR MPQLHDFQFF NIQRLTELYE
0801: KEVRYLMQAH QKTQMKDTIE VDEPEEVGDP LTAEEVEEKE LLLEEGFSTW SRRDFNAFIR ACEKYGRNDI KSIASEMEGK TEEEVERYAQ VFQVRYKELN
0901: DYDRIIKNIE RGEARISRKD EIMKAIGKKL DRYRNPWLEL KIQYGQNKGK LYNEECDRFM ICMVHKLGYG NWDELKAAFR TSPLFRFDWF VKSRTTQELA
1001: RRCDTLIRLI EKENQEFDER ERQARKEKKL SKSATPSKRP SGRQANESPS SLLKKRKQLS MDDYVSSGKR RK
Arabidopsis Description
CHR17Chromatin remodeling factor17 [Source:UniProtKB/TrEMBL;Acc:F4JY25]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.