Factsheet for Os01t0367900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32501	Sorghum	nucleus	93.95	93.95
Zm00001d040831_P021	Maize	nucleus	92.23	91.16
Zm00001d009312_P028	Maize	nucleus	92.59	90.71
CDY47176	Canola	cytosol	37.85	88.4
Os05t0150300-01	Rice	nucleus	88.17	84.28
VIT_05s0020g01780.t01	Wine grape	nucleus	81.75	83.8
KRH21031	Soybean	nucleus	80.76	83.79
KRH50913	Soybean	nucleus	79.86	83.55
KRH11241	Soybean	nucleus	80.76	83.4
KRH02212	Soybean	nucleus	79.67	83.29
Solyc06g054560.2.1	Tomato	nucleus	79.67	83.13
CDY18857	Canola	nucleus	78.77	83.13
PGSC0003DMT400079102	Potato	nucleus	79.4	83.08
Bra040221.1-P	Field mustard	nucleus	78.68	83.03
AT3G06400.3	Thale cress	nucleus	79.13	82.88
GSMUA_Achr3P23910_001	Banana	nucleus	79.86	82.69
PGSC0003DMT400058376	Potato	nucleus	78.86	82.05
CDY24695	Canola	nucleus	77.87	81.86
AT5G18620.2	Thale cress	nucleus	79.04	81.62
Bra020751.1-P	Field mustard	nucleus	77.6	81.58
Solyc01g067390.2.1	Tomato	nucleus	78.32	81.41
TraesCS3D01G068900.1	Wheat	nucleus	82.38	81.36
TraesCS3A01G069900.2	Wheat	nucleus	82.93	81.24
TraesCS3B01G083400.1	Wheat	nucleus	83.2	81.22
CDX92595	Canola	nucleus	65.04	80.54
CDY13907	Canola	nucleus	76.6	80.08
Bra002173.1-P	Field mustard	nucleus	76.69	79.79
HORVU3Hr1G012850.1	Barley	nucleus	81.21	79.35
CDY02609	Canola	nucleus	72.81	76.4
CDY05261	Canola	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	77.96	76.17
Bra023689.1-P	Field mustard	nucleus	75.16	75.57
Os09t0442700-01	Rice	cytosol	24.03	31.48
Os03t0722400-01	Rice	cytosol	24.12	31.45
Os07t0660200-01	Rice	nucleus	15.18	26.62
Os05t0144300-01	Rice	nucleus	26.02	25.53
Os04t0566100-00	Rice	cytosol	17.43	22.36
Os03t0352500-01	Rice	nucleus	3.79	19.63
Os01t0881000-00	Rice	nucleus	19.42	19.53
Os07t0497100-01	Rice	nucleus	24.66	12.09
Os02t0689800-01	Rice	nucleus	11.02	11.44
Os06t0183800-01	Rice	cytosol, nucleus	2.8	7.03
Os03t0352450-00	Rice	nucleus	2.44	5.88
Os02t0114000-01	Rice	cytosol, nucleus	2.44	4.63
Os06t0255200-02	Rice	cytosol, nucleus, plastid	1.72	2.91
Os02t0114033-00	Rice	nucleus	1.9	2.43

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.1040.30	MapMan:12.4.1.1.4	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4325731
ProteinID:AAK53826.1	EMBL:AK105265	ProteinID:BAB64747.1	ProteinID:BAD61441.1	ProteinID:BAD88342.1	ProteinID:BAD89475.1
ProteinID:BAF04958.1	ProteinID:BAS72153.1	ncoils:Coil	ProteinID:EEE54577.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006325	GO:GO:0006338	GO:GO:0006351	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016589
GO:GO:0016787	GO:GO:0016818	GO:GO:0016887	GO:GO:0031011	GO:GO:0031491	GO:GO:0043044
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Homeobox-like_sf	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR017884
InterPro:IPR036306	InterPro:IPR038718	InterPro:ISWI	InterPro:ISWI_HAND-dom	InterPro:ISWI_HAND-dom_sf	EnsemblPlantsGene:Os01g0367900
EnsemblPlants:Os01t0367900-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFAM:PF09110	PFAM:PF09111
PFscan:PS51192	PFscan:PS51194	PFscan:PS51293	PANTHER:PTHR10799	PANTHER:PTHR10799:SF887	UniProt:Q7G8Y3
InterPro:SANT/Myb	InterPro:SANT_dom	InterPro:SLIDE	SMART:SM00487	SMART:SM00490	SMART:SM00717
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF101224	SUPFAM:SSF46689	SUPFAM:SSF52540	UniParc:UPI0000450583
RefSeq:XP_015621490.1	SEG:seg	:	:	:	:

Description

Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1). (Os01t0367900-01)

Coordinates

chr1:-:15075863..15083305

Molecular Weight (calculated)

127643.0 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.845

Length

1107 amino acids

Sequence
(BLAST)

0001: MAKPVKYDEE EEEVSSSGEE EEEQSDGAGS GSGEEEDEEE EEAPAAAAGE AAGGEEEEVD EEEIEAVTTG AGADEEEEES GAAAAAPGEG DEESQSTEDD
0101: EAVVGEDDDA DEAEGGAVVG KREKARLKEM QKLKKQKIQE ILDTQNAAVD ADMNNKGKGR LKYLLQQTEI FAHFAKGNQS KEKKPRGRGR HASKMTEEEE
0201: DEEYLKEEED ALAGSGGTRL LSQPSCIKGK MRDYQLAGLN WLIRLYENGI NGILADEMGL GKTLQTISLL GYLHEFRGIT GPHMVVAPKS TLGNWIKEIQ
0301: RFCPILRAVK FLGNPEERNH IRENLLQPGK FDVCVTSFEM AIKEKTTLKR FSWRYIIIDE AHRIKNENSL LSKTMRIYNT NYRLLITGTP LQNNLHELWS
0401: LLNFLLPEIF SSAETFDEWF QISGENDQQE VVQQLHKVLR PFLLRRLKSD VEKGLPPKKE TILKVGMSQM QKQYYRALLQ KDLEVINAGG ERKRLLNIAM
0501: QLRKCCNHPY LFQGAEPGPP YTTGEHLVEN AGKMVLLDKL LPKLKDRDSR VLIFSQMTRL LDILEDYLMY RGYQYCRIDG NTGGEDRDAS IEAFNKPGSE
0601: KFVFLLSTRA GGLGINLATA DVVVLYDSDW NPQADLQAQD RAHRIGQKKE VQVFRFCTEY TIEEKVIERA YKKLALDALV IQQGRLAEQK TVNKDDLLQM
0701: VRFGAEMVFS SKDSTITDED IDRIIAKGEE TTAELDAKMK KFTEDAIKFK MDDTAELYDF DDDKEENKLD FKKLVSDNWI EPPRRERKRN YSESEYFKQA
0801: LRQGAPAKPR EPRIPRMPHL HDFQFFNNQR LNELYEKEVR YLMQANQKKD TIDGEDEDQL EPLTAEEQEE KEQLLEEGFA TWTRRDFNTF IRACEKYGRN
0901: DIRSIAAEME GKTEEEVQRY AKVFKERYKE LSDYDRIIKN IERGEARISR KDEIMRAIGK KLDRYKNPWL ELKIQYGQNK GKFYNEECDR FMLCMVHKLG
1001: YGNWDELKAA FRMSPLFRFD WFVKSRTTQE LARRCDTLIR LVEKENQEYD EQERQARKDK RMAKNMTPTK RSALRVSEGE TTPSNSFKRR RQSLMDDYVG
1101: SGRRKRG

Best Arabidopsis Sequence Match ( AT3G06400.1 )
(BLAST)

0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR

Arabidopsis Description

CHR11Chromatin-remodeling protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JAV9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.