Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0114000-01 | Rice | cytosol, nucleus | 6.12 | 4.63 |
| Os07t0660200-01 | Rice | nucleus | 6.58 | 4.6 |
| Os05t0150300-01 | Rice | nucleus | 7.71 | 2.94 |
| Os02t0689800-01 | Rice | nucleus | 7.03 | 2.91 |
| Os01t0367900-01 | Rice | nucleus | 7.03 | 2.8 |
| Os03t0352500-01 | Rice | nucleus | 1.13 | 2.34 |
| Os07t0497100-01 | Rice | nucleus | 10.43 | 2.04 |
| Os05t0144300-01 | Rice | nucleus | 2.04 | 0.8 |
| Os09t0442700-01 | Rice | cytosol | 1.13 | 0.59 |
| Os03t0722400-01 | Rice | cytosol | 1.13 | 0.59 |
| Os01t0881000-00 | Rice | nucleus | 0.45 | 0.18 |
| Os02t0114033-00 | Rice | nucleus | 0.0 | 0.0 |
| Os03t0352450-00 | Rice | nucleus | 0.0 | 0.0 |
| Os04t0566100-00 | Rice | cytosol | 0.0 | 0.0 |
| Os06t0255200-02 | Rice | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os06t0183800-01 | EnsemblPlantsGene:Os06g0183800 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:DUF1086 | PFAM:PF06461 |
| ProteinID:BAS96489.1 | SMART:SM01146 | UniParc:UPI000393BC7C | UniProt:A0A0N7KLN2 | MapMan:35.1 | : |
Description
CHD-related gene 702Similar to Chromatin-remodeling factor CHD3. (Os06t0183800-01)
Coordinates
chr6:-:4167296..4174105
Molecular Weight (calculated)
49854.6 Da
IEP (calculated)
4.863
GRAVY (calculated)
-0.647
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: YDDDVSDNDT SLQSGLAGRR GPYSKKKQRN VDSLPFMEGE GRALRVYGFN QIQRTQFLQT LMRYGFQNYD WKEFTPRLKG KSVEEIQRYA ELVMIHLLED
101: INDSGYYADG VPKEMRTDET LVRLANISLV EEKVAAMEQG KITKLFPSYL LYEFPSLVGG RVWKAEQDLL LLKALIKHGY ARWQYISDDR DNGIFEAARQ
201: ELRLPTANEL ISSHSNNETN GNLESTQEGQ SNPTSMIHYR DTQRKIVEFI RKRYHLLERC LNLEYAVIKT KTPVPDDLAE QDFPGGHRPA VPDYSEMLRE
301: LPVLEPISKE VAPEGTTDQS QVSHLYNKMC FVLEDSAVPA LNSHFGDKAA SSGLANSLHK FEAVCEDVSR ILRSHENGTT PKEEVMLDAS SKETTSPKDP
401: ATEVPSSASK EATPPVQDPV IEAVKEEPPT VKAEDKMEID S
101: INDSGYYADG VPKEMRTDET LVRLANISLV EEKVAAMEQG KITKLFPSYL LYEFPSLVGG RVWKAEQDLL LLKALIKHGY ARWQYISDDR DNGIFEAARQ
201: ELRLPTANEL ISSHSNNETN GNLESTQEGQ SNPTSMIHYR DTQRKIVEFI RKRYHLLERC LNLEYAVIKT KTPVPDDLAE QDFPGGHRPA VPDYSEMLRE
301: LPVLEPISKE VAPEGTTDQS QVSHLYNKMC FVLEDSAVPA LNSHFGDKAA SSGLANSLHK FEAVCEDVSR ILRSHENGTT PKEEVMLDAS SKETTSPKDP
401: ATEVPSSASK EATPPVQDPV IEAVKEEPPT VKAEDKMEID S
0001: MSSLVERLRI RSDRKPVYNL DDSDDDDFVP KKDRTFEQVE AIVRTDAKEN ACQACGESTN LVSCNTCTYA FHAKCLVPPL KDASVENWRC PECVSPLNEI
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
0101: DKILDCEMRP TKSSEQGSSD AEPKPIFVKQ YLVKWKGLSY LHCSWVPEKE FQKAYKSNHR LKTRVNNFHR QMESFNNSED DFVAIRPEWT TVDRILACRE
0201: EDGELEYLVK YKELSYDECY WESESDISTF QNEIQRFKDV NSRTRRSKDV DHKRNPRDFQ QFDHTPEFLK GLLHPYQLEG LNFLRFSWSK QTHVILADEM
0301: GLGKTIQSIA LLASLFEENL IPHLVIAPLS TLRNWEREFA TWAPQMNVVM YFGTAQARAV IREHEFYLSK DQKKIKKKKS GQISSESKQK RIKFDVLLTS
0401: YEMINLDSAV LKPIKWECMI VDEGHRLKNK DSKLFSSLTQ YSSNHRILLT GTPLQNNLDE LFMLMHFLDA GKFGSLEEFQ EEFKDINQEE QISRLHKMLA
0501: PHLLRRVKKD VMKDMPPKKE LILRVDLSSL QKEYYKAIFT RNYQVLTKKG GAQISLNNIM MELRKVCCHP YMLEGVEPVI HDANEAFKQL LESCGKLQLL
0601: DKMMVKLKEQ GHRVLIYTQF QHMLDLLEDY CTHKKWQYER IDGKVGGAER QIRIDRFNAK NSNKFCFLLS TRAGGLGINL ATADTVIIYD SDWNPHADLQ
0701: AMARAHRLGQ TNKVMIYRLI NRGTIEERMM QLTKKKMVLE HLVVGKLKTQ NINQEELDDI IRYGSKELFA SEDDEAGKSG KIHYDDAAID KLLDRDLVEA
0801: EEVSVDDEEE NGFLKAFKVA NFEYIDENEA AALEAQRVAA ESKSSAGNSD RASYWEELLK DKFELHQAEE LNALGKRKRS RKQLVSIEED DLAGLEDVSS
0901: DGDESYEAES TDGEAAGQGV QTGRRPYRRK GRDNLEPTPL MEGEGRSFRV LGFNQSQRAI FVQTLMRYGA GNFDWKEFVP RLKQKTFEEI NEYGILFLKH
1001: IAEEIDENSP TFSDGVPKEG LRIEDVLVRI ALLILVQEKV KFVEDHPGKP VFPSRILERF PGLRSGKIWK EEHDKIMIRA VLKHGYGRWQ AIVDDKELGI
1101: QELICKELNF PHISLSAAEQ AGLQGQNGSG GSNPGAQTNQ NPGSVITGNN NASADGAQVN SMFYYRDMQR RLVEFVKKRV LLLEKAMNYE YAEEYYGLGG
1201: SSSIPTEEPE AEPKIADTVG VSFIEVDDEM LDGLPKTDPI TSEEIMGAAV DNNQARVEIA QHYNQMCKLL DENARESVQA YVNNQPPSTK VNESFRALKS
1301: INGNINTILS ITSDQSKSHE DDTKPDLNNV EMKDTAEETK PLRGGVVDLN VVEGEENIAE ASGSVDVKME EAKEEEKPKN MVVD
Arabidopsis Description
PKLchromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.