Factsheet for Os05t0144300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G087900.1	Wheat	nucleus	69.15	86.28
Zm00001d024816_P007	Maize	cytosol	81.65	82.97
Zm00001d006798_P002	Maize	nucleus	81.65	82.53
EES19009	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.45	82.52
TraesCS1B01G106900.4	Wheat	nucleus	81.47	80.97
TraesCS1D01G089200.2	Wheat	nucleus	81.47	80.83
Solyc01g079690.2.1	Tomato	nucleus	58.07	65.83
KRH27613	Soybean	nucleus	61.88	65.66
KRH35559	Soybean	nucleus	62.06	65.3
KRG91253	Soybean	nucleus	61.79	64.96
VIT_05s0020g02960.t01	Wine grape	nucleus	62.94	64.37
CDY18840	Canola	nucleus	58.51	60.94
AT3G06010.1	Thale cress	nucleus	59.04	60.44
Bra040237.1-P	Field mustard	nucleus	58.69	60.18
AT5G19310.1	Thale cress	nucleus	56.74	60.15
GSMUA_Achr6P20210_001	Banana	nucleus	65.07	50.07
GSMUA_Achr8P06840_001	Banana	nucleus	58.87	48.12
Os09t0442700-01	Rice	cytosol	23.05	30.77
Os03t0722400-01	Rice	cytosol	23.05	30.62
Os01t0367900-01	Rice	nucleus	25.53	26.02
Os04t0566100-00	Rice	cytosol	19.24	25.14
Os05t0150300-01	Rice	nucleus	25.71	25.04
Os01t0881000-00	Rice	nucleus	19.5	19.98
Os07t0660200-01	Rice	nucleus	9.75	17.43
Os03t0352500-01	Rice	nucleus	2.75	14.49
Os07t0497100-01	Rice	nucleus	22.87	11.42
Os02t0689800-01	Rice	nucleus	9.57	10.13
Os03t0352450-00	Rice	nucleus	3.19	7.84
Os02t0114033-00	Rice	nucleus	5.05	6.59
Os02t0114000-01	Rice	cytosol, nucleus	1.68	3.26
Os06t0255200-02	Rice	cytosol, nucleus, plastid	1.51	2.6
Os06t0183800-01	Rice	cytosol, nucleus	0.8	2.04

Protein Annotations

MapMan:12.4.1.1.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4337784	ProteinID:AAU90202.1	ProteinID:BAF16538.1
ProteinID:BAS92231.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0040029	GO:GO:0042393
GO:GO:0043044	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
EnsemblPlantsGene:Os05g0144300	EnsemblPlants:Os05t0144300-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF873	UniProt:Q60EX7	SMART:SM00487	SMART:SM00490
SMART:SM01314	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	InterPro:SnAC	UniParc:UPI000044477A
RefSeq:XP_015640100.1	SEG:seg	:	:	:	:

Description

DEAD-like helicase, N-terminal domain containing protein. (Os05t0144300-01)

Coordinates

chr5:-:2548660..2559171

Molecular Weight (calculated)

128283.0 Da

IEP (calculated)

6.348

GRAVY (calculated)

-0.593

Length

1128 amino acids

Sequence
(BLAST)

0001: MAASVEAAAA AVVAPPASVG GDEVVVGGGG GGASEQARTL IGALNLLSRN LPLPPAVLHA VSSIYHGGDA WEGEGEEGGE EEVAAAAAAV GDGCGESGEG
0101: EEDRADASPG ADEGVTLIQE LEDAVLKNQG PYMSYSELTA LKEDRFNTSI QHRLTELEGL PSTRGEDLQM KCLLELYGLK LLDLQKKVRT DISAEYWLHK
0201: KCAHPDRQLF DWGMMRIRYP FTMYGIGDSF SMDADDINRK KRFSERISRL EEEEKNQAEI RKRKFFSEIL NAAREYQLQV PASYKRKKQR NDGVLAWHVR
0301: ARQRINRMEK SRLQVLKAGD QEAYLRMVEE SKNERLKLLL GKTNELLEGI GKAVQRQKDA EHVSRPDGSE LPKGSESDDC SQISGLKVES PDEESPSDVD
0401: ADHHSSADHS KFNAGHRLDS TVHSIEEKVT EQPSALEGGE LRPYQLEGLQ WMLSLFNNNL NGILADEMGL GKTIQTIALI AYLLEKKEVT GPHLIIAPKA
0501: VLPNWSNEFK TWAPSIGTIL YDGRPDDRKA LREKNFGQRQ FNVLLTHYDL ILKDLKFLKK VHWHYLIVDE GHRLKNHECA LARTLVSRYQ IRRRLLLTGT
0601: PIQNSLQELW SLLNFILPNI FNSSQNFEEW FNAPFACEVS LNDEEQLLII HRLHQVLRPF LLRRKKDEVE KYLPVKTQVI LKCDMSAWQK AYYEQVTSNG
0701: RVSLGSGLKS KALQNLSMQL RKCCNHPYLF VEHYNMYQRQ EIVRSSGKFE LLDRLLPKLQ RAGHRVLLFS QMTKLLDILE VYLQMYQFKY MRLDGSTKTE
0801: ERGRLLADFN KKDSEYFLFL LSTRAGGLGL NLQTADTVII FDSDWNPQMD QQAEDRAHRI GQKNEVRVFV LVSVGSIEEE ILDRAKQKMG IDAKVIQAGL
0901: FNTTSTAQDR RALLQEILRR GTSSLGTDIP SEREINRLAA RNDEEFWLFE KMDEERRQRE NYKPRLMEGI EVPDWVFAND TLTEKIPADE PQNVLLTTKR
1001: RRKEVVYSDS FGDQWMKADD VVEETPRMAP RAKRSAYSSD VQEVDFSERR KRHKSLVNIA DDASIPMWTP EKVRAGVSSY SKDENEDDAE DESTTSVLQG
1101: GSFTWKTLRR KRSSHFSNSS DSKGRSAF

Best Arabidopsis Sequence Match ( AT3G06010.1 )
(BLAST)

0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK

Arabidopsis Description

CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.