Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g02960.t01 | Wine grape | nucleus | 54.91 | 72.98 |
| Solyc01g079690.2.1 | Tomato | nucleus | 49.05 | 72.26 |
| KRH35559 | Soybean | nucleus | 52.39 | 71.64 |
| KRH27613 | Soybean | nucleus | 51.84 | 71.5 |
| KRG91253 | Soybean | nucleus | 52.18 | 71.3 |
| TraesCS1A01G087900.1 | Wheat | nucleus | 42.22 | 68.47 |
| CDY18840 | Canola | nucleus | 49.93 | 67.59 |
| Zm00001d024816_P007 | Maize | cytosol | 50.55 | 66.76 |
| AT3G06010.1 | Thale cress | nucleus | 50.14 | 66.7 |
| Bra040237.1-P | Field mustard | nucleus | 50.0 | 66.64 |
| Zm00001d006798_P002 | Maize | nucleus | 50.07 | 65.77 |
| EES19009 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.48 | 65.66 |
| Os05t0144300-01 | Rice | nucleus | 50.07 | 65.07 |
| AT5G19310.1 | Thale cress | nucleus | 46.93 | 64.66 |
| TraesCS1B01G106900.4 | Wheat | nucleus | 49.39 | 63.79 |
| TraesCS1D01G089200.2 | Wheat | nucleus | 49.39 | 63.68 |
| GSMUA_Achr8P06840_001 | Banana | nucleus | 59.89 | 63.62 |
| GSMUA_Achr3P26090_001 | Banana | cytosol | 17.53 | 33.86 |
| GSMUA_AchrUn_... | Banana | cytosol | 11.12 | 33.61 |
| GSMUA_Achr8P09960_001 | Banana | nucleus | 20.74 | 28.12 |
| GSMUA_Achr3P23910_001 | Banana | nucleus | 20.26 | 27.78 |
| GSMUA_Achr4P25930_001 | Banana | cytosol | 14.32 | 26.02 |
| GSMUA_Achr6P02430_001 | Banana | cytosol | 15.21 | 24.7 |
| GSMUA_Achr4P21270_001 | Banana | cytosol | 17.46 | 18.56 |
| GSMUA_Achr8P29610_001 | Banana | nucleus | 19.71 | 17.2 |
| GSMUA_Achr8P00120_001 | Banana | nucleus | 17.12 | 17.17 |
| GSMUA_Achr1P24350_001 | Banana | nucleus | 23.4 | 16.09 |
| GSMUA_AchrUn_... | Banana | nucleus, plastid | 23.74 | 15.61 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.96 | 15.0 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 3.0 | 13.25 |
| GSMUA_Achr3P26510_001 | Banana | nucleus | 12.41 | 11.19 |
| GSMUA_Achr9P11210_001 | Banana | nucleus | 15.28 | 10.88 |
| GSMUA_Achr6P29570_001 | Banana | nucleus | 15.62 | 10.69 |
Protein Annotations
| Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0042393 | EnsemblPlantsGene:GSMUA_Achr6G20210_001 | EnsemblPlants:GSMUA_Achr6P20210_001 |
| EnsemblPlants:GSMUA_Achr6T20210_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| UniProt:M0T8L9 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF14619 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF873 | SMART:SM00487 | SMART:SM00490 | SMART:SM01314 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | InterPro:SnAC | UniParc:UPI000295A019 | SEG:seg |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G20210_001]
Coordinates
chr6:+:14647836..14663810
Molecular Weight (calculated)
168673.0 Da
IEP (calculated)
8.392
GRAVY (calculated)
-0.363
Length
1466 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAASVENPPP SSNTHVEETK TLIAALNLLS RNLPLPPDVL RAVASIYHAA HADLPSPTPE SEAEAIHLDP TGGTLTSELE DALLKQQLSR MSCSALIETK
0101: ESRFNGLIQH RLAELEVLPA TRGEDLQMKC LLELYGLKLV ELQKKVRSDV SAEYCLNKKC AHPEKQLFDW GMMRLRYPFN MYGIGDSFRV EADDRQRKKR
0201: YAERMSRLEE DEKNQADIRK RKFFAEILNA ARESQLQAQA VLKRRKQRND GIQAWHARQR QRATRAEKLR FQALKADDQE AYMRMVEESK NERLTMLLTK
0301: TNELLVCLGA AVQRQKDADG LEAPKSLEFE NLSKNSLSTS ETPGEMSLDD DNDFVDADSS QNKKANDLLE GQRQYNSAVH SIQEKVTEQP SLLQGGELRP
0401: YQLEGLQWML SLFNNNLNGI LADEMGLGKT IQTISLIAYL MENKGVTGPH LIVAPKAVLP NWINEFSTWV PSITAVLYDG RLDERKAMRE EYSGEGKFNV
0501: MITHYDLIMR DKAFLKKIHW HYMIVDEGHR LKNHECALAK TLVSGYRIRR RLLLTGTPIQ NSLQELWALL NFLLPSIFNS VQNFEEWFNA PFVDKCEVSL
0601: TDEEQLLIIR RLHQVIRPFL LRRKKDEVEK YLPSKIQVIL KCDLSAWQKA YYHQVTDIGR VGLESAHKEH IGNITYALVQ KGWRLCTFCF FKVVNMKLLN
0701: FANICFCSKM HFFSFMQTTT TTKSSAGFPT IQVSKTCDPF HRNQSAFNLI NIIFNSLIFV LLNQNVFFPR TIVFATCSLF TAIMWSDLRI VMSVEMGQLF
0801: QSCANRWTKP VFAYATCQKG YENQPGTIST VSSCLIKTYS DHFMGEISMS LMINLLKDIF TWAETPHNMD PIYGVPGLRD PSLGHKSICH LTNISFWSNA
0901: SQIGCYFIDF FMSIKMWSNN LISSYLMSSP SSIFAANQSL IKRLIIGLKI NKAYPFWTAL LIFSPMIRRF SILLLNINLL PTLVLLQSFH RFKTNMCFDT
1001: LQGLVFYIGL LLYQTTYHHH QLTLKLFKFA CLYSEDMSKM TQFSICFSLA RIKSKSLQNL SMQLRKCCNH PYLFVGDYNM WQKEQIVRAS GKFELLDRLL
1101: PKLQRAGHRV LLFSQMTKLI DILEIYLQLY DFKYLRLDGS TKTEERGTLL KNFNAPDSPY FMFLLSTRAG GLGLNLQTAD TVIIFDSDWN PQMDQQAEDR
1201: AHRIGQKKEV RVFVLVSVGS IEEEILERAK QKMGIDAKVI QAGLFNTTST AQDRREMLQE IMRRGTNSLG TDVPSEREIN RLAARTEEEF WLFEKMDEER
1301: RQKERYRSRL MVENEVPDWV YPKTNEDKPT VNLGQDTQGS EVSGKRSRKE VVYADLLSDV QWMKAVESGE DLSKITSRRK RKEHPSDACE SASEEVDRQS
1401: MSEHRNVNKY ILDEDVSDDS PVRLKSGLLH NKDEGESDAS SWPDNITWRT HKRKRSNHGL SSAHRI
0101: ESRFNGLIQH RLAELEVLPA TRGEDLQMKC LLELYGLKLV ELQKKVRSDV SAEYCLNKKC AHPEKQLFDW GMMRLRYPFN MYGIGDSFRV EADDRQRKKR
0201: YAERMSRLEE DEKNQADIRK RKFFAEILNA ARESQLQAQA VLKRRKQRND GIQAWHARQR QRATRAEKLR FQALKADDQE AYMRMVEESK NERLTMLLTK
0301: TNELLVCLGA AVQRQKDADG LEAPKSLEFE NLSKNSLSTS ETPGEMSLDD DNDFVDADSS QNKKANDLLE GQRQYNSAVH SIQEKVTEQP SLLQGGELRP
0401: YQLEGLQWML SLFNNNLNGI LADEMGLGKT IQTISLIAYL MENKGVTGPH LIVAPKAVLP NWINEFSTWV PSITAVLYDG RLDERKAMRE EYSGEGKFNV
0501: MITHYDLIMR DKAFLKKIHW HYMIVDEGHR LKNHECALAK TLVSGYRIRR RLLLTGTPIQ NSLQELWALL NFLLPSIFNS VQNFEEWFNA PFVDKCEVSL
0601: TDEEQLLIIR RLHQVIRPFL LRRKKDEVEK YLPSKIQVIL KCDLSAWQKA YYHQVTDIGR VGLESAHKEH IGNITYALVQ KGWRLCTFCF FKVVNMKLLN
0701: FANICFCSKM HFFSFMQTTT TTKSSAGFPT IQVSKTCDPF HRNQSAFNLI NIIFNSLIFV LLNQNVFFPR TIVFATCSLF TAIMWSDLRI VMSVEMGQLF
0801: QSCANRWTKP VFAYATCQKG YENQPGTIST VSSCLIKTYS DHFMGEISMS LMINLLKDIF TWAETPHNMD PIYGVPGLRD PSLGHKSICH LTNISFWSNA
0901: SQIGCYFIDF FMSIKMWSNN LISSYLMSSP SSIFAANQSL IKRLIIGLKI NKAYPFWTAL LIFSPMIRRF SILLLNINLL PTLVLLQSFH RFKTNMCFDT
1001: LQGLVFYIGL LLYQTTYHHH QLTLKLFKFA CLYSEDMSKM TQFSICFSLA RIKSKSLQNL SMQLRKCCNH PYLFVGDYNM WQKEQIVRAS GKFELLDRLL
1101: PKLQRAGHRV LLFSQMTKLI DILEIYLQLY DFKYLRLDGS TKTEERGTLL KNFNAPDSPY FMFLLSTRAG GLGLNLQTAD TVIIFDSDWN PQMDQQAEDR
1201: AHRIGQKKEV RVFVLVSVGS IEEEILERAK QKMGIDAKVI QAGLFNTTST AQDRREMLQE IMRRGTNSLG TDVPSEREIN RLAARTEEEF WLFEKMDEER
1301: RQKERYRSRL MVENEVPDWV YPKTNEDKPT VNLGQDTQGS EVSGKRSRKE VVYADLLSDV QWMKAVESGE DLSKITSRRK RKEHPSDACE SASEEVDRQS
1401: MSEHRNVNKY ILDEDVSDDS PVRLKSGLLH NKDEGESDAS SWPDNITWRT HKRKRSNHGL SSAHRI
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
Arabidopsis Description
CHR12Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.